| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0559 |
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| Symbol | |
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| ID | 5456176 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 612862 |
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| End bp | 613635 |
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| Gene Length | 774 bp |
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| Protein Length | 257 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640876128 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001411839 |
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| Protein GI | 154251015 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.521861 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 65 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGTAT CCCTGGAAGG CCGCGTGGCG CTGGTGACGG GCGGCGGCCG CGGCATCGGC
CGTTCGATCG CGATTGCGCT TGCGGAAGCG GGCGCGGATG TCGCGGTCAA CTATCGCCGC
GACGAAGAAG CCGTGAATGA AACGGTCGCC GAAATCACCA AACTCGGCCG CAAGGCGAAA
GCCTATTCGG CATCGGTCGA AAATTTCGAG GAAGACCAGA AGATGGTCGC CGACGTGCTG
AAGGATTTCG GCTCCATCGG CATTCTCGTG AACAATGCAG GCATTGCGTC GCGCGGGCAG
ACGGTAGCGG ACACCGATCC GCTGGAGCTT GAACGCGTGC TGAAGGTGCA TGCGATGGCG
CCGCATTTCA TGTCGAAGCT CGTCATCCCG CATATGAGAA AGGAAGAGCG CGGCGACATC
ATCATCATCT CGTCGGTCGC GACGCTGAGC CATTCGGCAA ATGGCGGCCC CTACAATATG
GGAAAGGCGG CTGCGGAGGC ACTGGCACTG ACGCTCGCCA AGGAAGAGAG AAAGTTCGGC
ATACGGACGA ACATCGTGGC GCCCGGTCTC ACCGCCACCG ATATGGGCTC GCGCCTTGCC
GCCGCGCGCG CCGGAAAGAA GGGCATGGAC ATTCACGAAC TCGACGCCAA CATGCCGTTC
GGTCATGTCT GCGGCCCCGA TGAAGTGGCG GCGGCGGTGG TCTATCTCGT CTCGGATGCG
AACCCTTATG CGAACGGACA GAAGATCAAT ATCGACGGCG GCGGCCCCAT GTAA
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| Protein sequence | MKVSLEGRVA LVTGGGRGIG RSIAIALAEA GADVAVNYRR DEEAVNETVA EITKLGRKAK
AYSASVENFE EDQKMVADVL KDFGSIGILV NNAGIASRGQ TVADTDPLEL ERVLKVHAMA
PHFMSKLVIP HMRKEERGDI IIISSVATLS HSANGGPYNM GKAAAEALAL TLAKEERKFG
IRTNIVAPGL TATDMGSRLA AARAGKKGMD IHELDANMPF GHVCGPDEVA AAVVYLVSDA
NPYANGQKIN IDGGGPM
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