Gene Plav_0546 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_0546 
Symbol 
ID5455244 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp595840 
End bp598350 
Gene Length2511 bp 
Protein Length836 aa 
Translation table11 
GC content62% 
IMG OID640876114 
Productmalto-oligosyltrehalose synthase 
Protein accessionYP_001411826 
Protein GI154251002 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3280] Maltooligosyl trehalose synthase 
TIGRFAM ID[TIGR02401] malto-oligosyltrehalose synthase 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones56 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCCGC GCGCGACTTA TCGCATGCAG TTCCACAAGG ATTTCACCTT CGCCGATGCG 
GAGAAGCTGA TTCCCTATCT CGAGGATCTC GGGATCAGTC ATCTCTACAC CTCGCCCATC
ACGACGGCGC GTGCCGGCTC GATGCATGGA TATGATGTCG TCGACCCGAC CCGTATCAAT
CCGGAACTGG GCAGCGAGGA TGATTTTCGT GCCCTCTCGC TCGCCTTGCG CAAGCGTGGG
CTCGGCATCG TGATAGACAT TGTGCCCAAC CACATGGGCT TCGCGGGCGG CGCAAATGCT
TGGTGGCAGG ATGTTCTGGC TCACGGACGA AACAGCCGCT ACGCCCGTTT CTTCGATATA
GACTGGCGGG AGAAGCTGCT GCTGCCGCTG CTCGGAGAGC CGTTTTCCGC CGCTCTCGAG
AAGGGCGTTA TCGAACTTCG AGAAGAAGAC GGAGACTTCT TCTTTACTGC CTATGGCAAG
AACCGCTTTC CTCTTAGGCC CGAAGATGCA TCGGAGCTGG CGGACGACGC TCATGCGGCG
TTTGCTCTTT ACGATCCGAA GAGCGAAGCC GGACGGGACC GGCTGCGCAC GCTTCACGAC
CGGCAGCATT ATCGTCTTGC TTCGTGGCGG ATTGCGAATG ACGAACTGAA CTGGCGCCGG
TTTTTCACGA TCACGGGCCT GGCCGGCATT CGCATCGAAG ACCGGGAGGT GTTCGAAGAG
ACACATGCGC TCTATTTCCG TCTCTACGGA GAAGGGCTGA TCGATGGCGT CCGTATAGAC
CATGTCGACG GCCTTACAGA TCCGATCGGC TATTGCAGGA TGCTGAGGGA AAGGTTTGAG
GGGATCGAAC GTCCGGCAGG GCTGGCGCGG GAGCCCGCCT ATATCGTCAT CGAGAAAATT
CTCGGTGCGG ATGAAAAGCT TGGCAAGGAC TGGGCCGTCG ACGGCACGAG CGGTTACGAC
TTCATGGCGG AGGTTGCGGC GGTTCTGCAT GCGCCCGAGG GGGAAGGGCC TCTCACTGCG
CTATGGAGCG AAATGGGCGG CCGCCACAGC GATTTCGAAG CAGAGGAACT TCGCGCCCGG
CAGGAAACGC TTTCCTGGCA GTTTGAAGGT CAGTTCAGCC GCTGCGTCGC GGCTTTTGCC
ACGCTCGCCC GAACCACGCC CGAGGCGGAG GAGATCACCG CCGGGATGTT ACGCCGCGCC
ATCGAGCGGC TTCTGTGGGT TTTTCCGGTC TACCGGACCT ATGGGACGGG AACCTCGGCA
CCGGCAGGCG ATGAAGAAAT TCGTACCCTG GCACGAAAGC GCGTCGAGCC GTTTATCCCG
CCGGGCGAAG GACAAGTTGT CGACATGGTG CTGGCGTGGC TGGCGGGTAC TGGACCCGGG
GACACGGATT GTGCGGCGGA GGCAGTGCGG CGCTTCCAGC AATTATCCGT GCCAATTGCC
GCCAAGGCGG TGGAGGACAC GGCCTTCTAT CGCTATGGAC GGCTGCTCTC GCGCAATGAT
GTGGGATTCG ACGCGGGACA GTTCGCCTCG ACGGTCGGGG AGTTTCATGC GTCTGCGGCG
CGGCGGGCCA GGGATTTTCC GCACGCGATG CTGGCAACCG CAACTCACGA CCACAAGCGC
GGCGAAGACA TTCGCGCGCG GCTGGCTGTG CTGAGTGAAA TTCCGGAGGA ATGGCGCACG
CGCGTGAGAG CCTGGCGCGA AATGAATGCA CCGCTGAGCC GCAATCTGGC GTCACCCGAT
CTCTACATGC TCTACCAGAC ATTGTTCGGC GCCTGGCCGG TGGGGCTCAC CGCATCGGAC
GCGCCCGGCC TGGCGGCTTT TTCAGCCCGG GTGACGGCGT GGCAGGTCAA GGCGCTGCGG
GAGGCGGAGC GCCGGTCGGC GTGGGAAGAG CCCGACGAGA GCTACGAAGC CTCCTGCAGG
GAGTTGGTCG AGGCCTTGCT CGATCCGGTA CGGTCGCGCG ATTTCCTCAC GGACCTGACC
GATTTTGTGG CATGGACCGA ACCGGCAGCG CGCGCCAACA GCTTGGTGCA GGCCGCTCTT
CACTACACGG TGCCCGGCGT ACCCGATCTC TATCAGGGGG CCGAACTGCC GGATTTGAGC
CTGGTCGATC CCGATAATCG CCGTCCCGTC GACTATGCGG CACGCCGGGA GTTGATCGCG
GGCGGCTCTA CAGGCATTCA GTGGGCAGAT GAGAAATTCG CGCTGATCGC GTCGCTTCTC
GGCTATCGGC TGGAACATCC GGCACTGTTC GCGGGAGGCG ACTACAAGCC CGTGGTGGTA
TCCGGCCTGC GGTCTGAGAA TGTTCTCGCC TTCCGCCGCA GGGGCGGAGG CAAGGAGCTC
GTTTGCGCGG TCGCCCTCCG CTGTGCGAGT GCATTGGCCG GCAGAAAGAG CATTGCGGCG
CCAGCCGAAT TCTGGGGCGA TACTGCGCTT GATCTGCCAC CGCCGGAGGC GCGCCGCGCC
TCCGAATTGT TCAGGGAAGG CCCGGTCTTC CTGTCGATAC GTGATATCTG A
 
Protein sequence
MSPRATYRMQ FHKDFTFADA EKLIPYLEDL GISHLYTSPI TTARAGSMHG YDVVDPTRIN 
PELGSEDDFR ALSLALRKRG LGIVIDIVPN HMGFAGGANA WWQDVLAHGR NSRYARFFDI
DWREKLLLPL LGEPFSAALE KGVIELREED GDFFFTAYGK NRFPLRPEDA SELADDAHAA
FALYDPKSEA GRDRLRTLHD RQHYRLASWR IANDELNWRR FFTITGLAGI RIEDREVFEE
THALYFRLYG EGLIDGVRID HVDGLTDPIG YCRMLRERFE GIERPAGLAR EPAYIVIEKI
LGADEKLGKD WAVDGTSGYD FMAEVAAVLH APEGEGPLTA LWSEMGGRHS DFEAEELRAR
QETLSWQFEG QFSRCVAAFA TLARTTPEAE EITAGMLRRA IERLLWVFPV YRTYGTGTSA
PAGDEEIRTL ARKRVEPFIP PGEGQVVDMV LAWLAGTGPG DTDCAAEAVR RFQQLSVPIA
AKAVEDTAFY RYGRLLSRND VGFDAGQFAS TVGEFHASAA RRARDFPHAM LATATHDHKR
GEDIRARLAV LSEIPEEWRT RVRAWREMNA PLSRNLASPD LYMLYQTLFG AWPVGLTASD
APGLAAFSAR VTAWQVKALR EAERRSAWEE PDESYEASCR ELVEALLDPV RSRDFLTDLT
DFVAWTEPAA RANSLVQAAL HYTVPGVPDL YQGAELPDLS LVDPDNRRPV DYAARRELIA
GGSTGIQWAD EKFALIASLL GYRLEHPALF AGGDYKPVVV SGLRSENVLA FRRRGGGKEL
VCAVALRCAS ALAGRKSIAA PAEFWGDTAL DLPPPEARRA SELFREGPVF LSIRDI