| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0543 |
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| Symbol | |
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| ID | 5454854 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 590008 |
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| End bp | 592122 |
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| Gene Length | 2115 bp |
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| Protein Length | 704 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640876111 |
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| Product | glycogen debranching enzyme GlgX |
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| Protein accession | YP_001411823 |
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| Protein GI | 154250999 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0247855 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 0.604467 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCCGC TTCCGGAGCG ACTTGACAAT GGCTCGCCGC GTCCGCTCGG CGCCACCTTT
GATGGCCTCG GCGTCAACTT CGCGGTCTTC TCGGCGCATG CCGAAAAGAT CGAACTCTGC
CTGTTTGAAC CCACGGGCAA GCGGGAGATC GCGCGCTACG AGTTGCCCGA ATGGACCGAC
GAGGTGTGGC ACGGCTATCT GCCGGATGCG CGGCCGGGCC TTCTCTACGG GTACCGCGCC
TATGGACGCT ATGCGCCGGA AGAAGGACAC CGCTTCAACC CGAACAAATT GCTGCTCGAT
CCCTATGCAC GAAAACTCGC CGGCGAAGTG CGCCGGACCG ATGCGCTGCA TGGCTACCGC
GTTCGCTCGC ACCGCGCCGA TCTGAGCTTC GACCGCAGGG ACAGCGCGGC GGCCATGCCG
AAGGGCGTGG TCACGAATAC CACTTTCGAC TGGTCGCGCG ACATCAGGCC CAACACACCT
TGGTCGGAGA CGGTCATATA TGAAGCCCAT GTCAAAGGGC TGACAAAGCT GATGGAAGAT
GTTCCCCCGA CCGAACAGGG AACATTCGCG GCGCTGGCGC ATCCCAAGGT GATCGATCAT
CTGAAGCGGC TCGGCGTGAC GGCGCTCGAA CTGATGCCGA TACATGCCTT TGTGCAGGAC
CGTTTCCTGC AGGAAAAGGG CCTGCGTAAT TACTGGGGAT ACAACACGCT CGGCTTCTTC
GCGCCGGAGC GCAGCTATCT CGCTTCCGAC GATCAGGATG AATTGCGGAT CGCGGTCCGG
CGGCTGCACG CGGCGGGCAT CGAGGTCATT CTCGACGTCG TCTACAACCA CACATGCGAG
GGAAGCGAGC GGGGACCGAC CATGTCTTGG CGCGGGCTCG ACAATGCCAC CTATTACCGG
CTGACCGCCG AGAGCGCGCG CTACTGCGTC AACGATACCG GCACGGGAAA CACGCTCAAC
CTGTCGAATG CGCGCGTGAT CCAGATGGTG GCGGACTCGC TTCGCTTTTG GGCGACGTCC
TTCGGCATCG ATGGCTTCCG CTTCGATCTC GGATTGACGC TCGGCCGGAC GGACCAGGGC
TTCAATCCGG GCGCGGGCTT TTTCGACGTA CTCCGGCAGG ACCCGGTCCT GAGCGGATTG
AAGCTCATAA CCGAACCCTG GGATATCGGG CCCGGCGGCT ATCAGCTCGG CAATTTTCCA
CCGAGCTTCG CGGAGTGGAA CGACAAGTAC CGTGATTGCG TGAGGAAATA CTGGAGGGGC
GATGCGTCGC TGCGCGGCGA ACTTGCGGCA CGTATTTCAG GATCGGGAGA CCTCTTCGAC
CGTAGGGCGC GCCGGCCCTG GGCGAGCGTG AACTACATCG CCAGCCATGA TGGCTACACG
CTGGCGGATC TCGTCGCCTA TGAACACCGG CATAATGAAC GCAACGGCGA GGAAAACCGG
GACGGGCATT CGCATAATTA TTCACGGAAC TGGGGAGCCG AAGGGCCGAC CGACGACGCG
GCGATCCTTG AGGTGCGAAA CCGCGTTCGC CGCTCGATGC TGACGACGCT GTTCACCTCG
CTCGGCACAC CGATGCTGCT GGCCGGAGAC GAATTCGGCC GCAGTCAGGG CGGGAACAAC
AATGCCTACT GCCAGGACAA TGAAATCAGC TGGCTGGACT GGAGTGCGAT GGAGACGGAG
GAGGGCAAAA GCCTTTTTGC CTTTACCTCC CGGCTGATCG ACATACGCAA ACGCCACACG
ATGCTGCGGG CGCCGAACTT TCTCTACGGT GAAGATGCGA CCGGGCATGG TCTCAACGAC
GTAGAGTGGT TTGACGAGCG CGGCACCGCG CCCTCCGAGG AGGACTGGAA CAACCCGGAC
GGCCGTGCGC TCGCGATGCG GCGGGCATGC CGGCACGAAG ACGGACATAT CGAAGTGCTG
ACGCTGCTTC TCAATGCTTC CGACCACCCG ATCTCGTTCC ACATAACGCC ATCCGAAAAC
AAGTGCACCG TTCTCATCGA CAGCATCTAT CCCGAACGGG ACGAGATAGA GGTCAGCGGT
CAATACGAGG TGGAGGCGCG CGGCGCGGCC CTCCTGCGCT GCACGATCGA GTTACCGGCG
AGCGAAGAAG CATGA
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| Protein sequence | MSPLPERLDN GSPRPLGATF DGLGVNFAVF SAHAEKIELC LFEPTGKREI ARYELPEWTD
EVWHGYLPDA RPGLLYGYRA YGRYAPEEGH RFNPNKLLLD PYARKLAGEV RRTDALHGYR
VRSHRADLSF DRRDSAAAMP KGVVTNTTFD WSRDIRPNTP WSETVIYEAH VKGLTKLMED
VPPTEQGTFA ALAHPKVIDH LKRLGVTALE LMPIHAFVQD RFLQEKGLRN YWGYNTLGFF
APERSYLASD DQDELRIAVR RLHAAGIEVI LDVVYNHTCE GSERGPTMSW RGLDNATYYR
LTAESARYCV NDTGTGNTLN LSNARVIQMV ADSLRFWATS FGIDGFRFDL GLTLGRTDQG
FNPGAGFFDV LRQDPVLSGL KLITEPWDIG PGGYQLGNFP PSFAEWNDKY RDCVRKYWRG
DASLRGELAA RISGSGDLFD RRARRPWASV NYIASHDGYT LADLVAYEHR HNERNGEENR
DGHSHNYSRN WGAEGPTDDA AILEVRNRVR RSMLTTLFTS LGTPMLLAGD EFGRSQGGNN
NAYCQDNEIS WLDWSAMETE EGKSLFAFTS RLIDIRKRHT MLRAPNFLYG EDATGHGLND
VEWFDERGTA PSEEDWNNPD GRALAMRRAC RHEDGHIEVL TLLLNASDHP ISFHITPSEN
KCTVLIDSIY PERDEIEVSG QYEVEARGAA LLRCTIELPA SEEA
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