| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0542 |
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| Symbol | |
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| ID | 5456744 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 587813 |
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| End bp | 590011 |
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| Gene Length | 2199 bp |
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| Protein Length | 732 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640876110 |
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| Product | 1,4-alpha-glucan branching enzyme |
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| Protein accession | YP_001411822 |
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| Protein GI | 154250998 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.217591 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 0.258391 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGGGCG GCGACAGGCT CGAATATGCG GCGGGGGCTC TGCTCGAAGG GCGTTTGACC
GATCCGTTCG CGCTGCTCGG ACCGCATGCT CAGGATGATG GATATGTCGT CCGTACATTT
CAGCCGGGCG CGGAAAGTGT GTCACTTATC GCGCGCTCCG GCGGCGAGGA CATCGGCACG
CTCGAGGAGA TTTCGGACGG GCTCTTTGCG GGCCGGATGA AGGAGGACAA GCCCTATAGC
TTGCGCATCC TCTGGCCCGG CGGTGCGGTG CAGGAGGTCG AGGATGCCTA TTCCTTCGGC
CCGGTGCTCG GAGACCTCGA CCTGTATCTC TTCGGCGAAG GCCGGCATTG GGATCTCGCG
CGCGTCCTCG GCGCGCAACC GCGAACGATC GAAGGCGTTG CGGGCGTTGC CTTCGCGGTA
TGGGCGCCGA ATGCGCGGCG CGTATCCGTC ATTGGCGATT TCAACAATTG GGATGGACGG
CGGCACCCGA TGCGGCTGCG CCATGGCGCG GGGATATGGG AGCTCTTCGT GCCGCGGCTC
GGCCAGGGCA CACGCTACAA ATACGAAATC GCGGGTGCGG ACGGCAGCAC GACGCAAAGA
GCCGACCCTG TCGCGCGCGC CACCGAGGCA CCGCCTGCGA CGGCATCGGT CGTCGCCGCG
CCGCCGGACT ATCGCTGGAC GGATGAAGAC TGGCTCGCTG AACGCGCCTC CCGCCAGCGC
CCGAATGCCG CGATCTCGAT CTACGAGGTA CATGCGGCCT CATGGGTACG GCCGGAGGGG
AACGTGGAAG GTACGCTCGA CTGGAATGCG CTGATAGACA GGCTCATTCC CTATGTCGCC
GACATGGGCT TCACGCATGT CGAGTTCCTG CCCATCATGG AGCATCCGTT CGGTGGCTCG
TGGGGATACC AGACACTCTC GCAATTCGCG CCCTCCGCGC GCTTCGGGAA ACCGGAGGAT
TTCGCGCGGT TCGTTGATGC ATGTCACCGC GCCGGCATCG GCGTCATCCT CGACTGGGTA
CCGGCTCATT TTCCGACGGA CCCGCACGGC CTCGCCCATT TCGATGGAAC GCATCTCTAT
GAACATGCGG ACCCGCGGGA GGGCTTTCAT CCCGACTGGA ATACGATGAT CTACAATCTC
GGCCGGACGG AAGTTGCGGG CTTTCTTCTT GCGTCGGCGC TTTGGTGGAT CGAGACCTTT
CATGTCGATG GGCTACGTGT CGACGCCGTT GCGTCGATGC TTTACCGGGA TTACAGCCGC
AAGGCCGGCG AATGGGTGCC GAACATTCAT GGCGGGCGGG AAAATCTGGA ATCCGTCGAC
TTCCTGAAGC GGCTCAATGC CATCATCGCG GAACGCTGCC CGGGCGCCGT CACCATCGCC
GAGGAGTCGA CCGCATGGCC GGGCGTTTCG GCGCCGCTCA AAAGCGGAGG GCTCGGCTTT
TCCTACAAGT GGAACATGGG CTGGATGCAC GACACGCTCC AATATGTGGA GCGCGATCCG
CTCTATCGCA AATGGCATCA CTCCGAGATG ACCTTCGGGC TTGTCTATGC GTTCTCGGAG
AAATTCGTTC TGCCGCTGAG CCATGACGAA GTGGTGCATG GGAAAGGCTC GCTGATCGGG
AAGATGCCGG GCGACCGGTG GCGGAAATTC GCGACGCTAC GCGCCTACTA CACCTTCATG
TGGACGCATC CCGGCAAGAA GCTCCTTTTC ATGGGGGGCG AGATCGCGCA GGACAGCGAG
TGGAACCACG ATGCCGAAGT CGCGTGGCAC TTATTGTCGA TCCCCGAACA CGCCGCCGTG
CAACGCCTCG TCCGCGACCT CAATCGGCTC TATGCGAGCG AACCGGCACT CCACGCACGC
GACACGGAGC CTGCGGGCTT TCAATGGATC GTCGGCGCAG ACGCGGAGCG CAGCGTTTTC
GTCTATGCGC GATATGGCGA GACCGGAACG CCGCCCATGG TGGTGCTCGT CAACATGACG
CCGGAGCCAT GCACCGACTA CCGGATCGGC ATGCCGCTTG CCGGGCAGTG GCGCGAAATA
TTGAACAGCG ACGCGGCCAT TTACGGCGGC GGCAACATCG GCAATGCCGG TCTGGTGGAA
GCGCGCGCGG CGCCTGCCCA TGGCCAGCCT GCAAGCGCGA GCGTCGTGCT GCCGCCTCTG
GCCGCCGTTA TTCTCCAGCA TGAGGGACCG AACCGATGA
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| Protein sequence | MEGGDRLEYA AGALLEGRLT DPFALLGPHA QDDGYVVRTF QPGAESVSLI ARSGGEDIGT
LEEISDGLFA GRMKEDKPYS LRILWPGGAV QEVEDAYSFG PVLGDLDLYL FGEGRHWDLA
RVLGAQPRTI EGVAGVAFAV WAPNARRVSV IGDFNNWDGR RHPMRLRHGA GIWELFVPRL
GQGTRYKYEI AGADGSTTQR ADPVARATEA PPATASVVAA PPDYRWTDED WLAERASRQR
PNAAISIYEV HAASWVRPEG NVEGTLDWNA LIDRLIPYVA DMGFTHVEFL PIMEHPFGGS
WGYQTLSQFA PSARFGKPED FARFVDACHR AGIGVILDWV PAHFPTDPHG LAHFDGTHLY
EHADPREGFH PDWNTMIYNL GRTEVAGFLL ASALWWIETF HVDGLRVDAV ASMLYRDYSR
KAGEWVPNIH GGRENLESVD FLKRLNAIIA ERCPGAVTIA EESTAWPGVS APLKSGGLGF
SYKWNMGWMH DTLQYVERDP LYRKWHHSEM TFGLVYAFSE KFVLPLSHDE VVHGKGSLIG
KMPGDRWRKF ATLRAYYTFM WTHPGKKLLF MGGEIAQDSE WNHDAEVAWH LLSIPEHAAV
QRLVRDLNRL YASEPALHAR DTEPAGFQWI VGADAERSVF VYARYGETGT PPMVVLVNMT
PEPCTDYRIG MPLAGQWREI LNSDAAIYGG GNIGNAGLVE ARAAPAHGQP ASASVVLPPL
AAVILQHEGP NR
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