| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0534 |
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| Symbol | |
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| ID | 5453971 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 574999 |
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| End bp | 576075 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640876102 |
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| Product | tartrate dehydrogenase |
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| Protein accession | YP_001411814 |
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| Protein GI | 154250990 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR02089] tartrate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 0.0457204 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCAAG ACCGGAGCTA TCGCATCGCC GTCATTCCCG GCGACGGCAT CGGCAAGGAG
GTCGTGCCGG AGGGCCTGCG CGTCCTGCAG GCGGTCTCCG CCCGATATGG CTGCCGCTTC
CGGTTCGACG ATTTCGATTT TGCCTCCTGC GACTATTACC TCCGCCACGG CAAGATGATG
CCGGATGACT GGAAGGCGCT GATCGGCGGT CACGACGCGA TCTTCTTCGG CGCTGTCGGC
TGGCCGGAAG CGGTGCCCGA CCATGTGTCG CTATGGGGTT CGCTGATCCA GTTCCGGCGC
GAATTCGACC AGTATGTGAA TCTGCGCCCG GTCAAGCTCA TGCCCGGCGT GCCCTGCCCG
CTGGCCGGCC GCAAACCCGG CGACATCGAC TTCTATGTGG TGCGGGAGAA TACCGAGGGC
GAATATTCAT CCATCGGCGG CCGCATCTTT CCCGGGACCG AGCGCGAAGT GGTGATGCAG
GAAACGGTGA TGACGCGCGT CGGAGTCGAC CGCATCCTGA AATTCGCCTT CGAGCTGGCT
GAGCGGCGGG AGAAAAAGCA CCTCACCTCC GCCACGAAAT CAAACGGCAT TTCCATCACC
ATGCCCTATT GGGACGAGCG GGTGGAAGCG ATGGCGGCCG GCTACCCGGC GGTGCGCTGG
GACAAATATC ACATCGACAT TCTCGCCGCG CATTTCGTGC AGCACCCGGA CTGGTTCGAC
GTCGTCGTCG CCTCCAATCT TTTCGGCGAC ATTCTCTCCG ACCTCGGGCC CGCCTGCACC
GGCACTATCG GCATCGCGCC CGCCGGCAAC ATCAATCCCG ACCGGAAATT TCCGTCGCTC
TTCGAACCCG TGCATGGCTC GGCCCCGGAT ATCGCCGGCA AGGGCATCGC CAATCCCGTC
GGGCAGATCT GGTCCGCCGC GCTCATGCTC GACCATCTGG GAGAAACGGA CGCCGCCGCC
GCCATCGTCG CCGCGATCGA AACGGTGCTG GCGCAGCCGC ATCTGCGAAC CCCCGATCTC
GGCGGCCCGG CGGATACCGT CACCTGCGGC CGGGCCATCG CGGACGCGTT GCGCTGA
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| Protein sequence | MDQDRSYRIA VIPGDGIGKE VVPEGLRVLQ AVSARYGCRF RFDDFDFASC DYYLRHGKMM
PDDWKALIGG HDAIFFGAVG WPEAVPDHVS LWGSLIQFRR EFDQYVNLRP VKLMPGVPCP
LAGRKPGDID FYVVRENTEG EYSSIGGRIF PGTEREVVMQ ETVMTRVGVD RILKFAFELA
ERREKKHLTS ATKSNGISIT MPYWDERVEA MAAGYPAVRW DKYHIDILAA HFVQHPDWFD
VVVASNLFGD ILSDLGPACT GTIGIAPAGN INPDRKFPSL FEPVHGSAPD IAGKGIANPV
GQIWSAALML DHLGETDAAA AIVAAIETVL AQPHLRTPDL GGPADTVTCG RAIADALR
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