| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0531 |
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| Symbol | |
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| ID | 5456447 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 569749 |
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| End bp | 572883 |
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| Gene Length | 3135 bp |
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| Protein Length | 1044 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640876099 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001411811 |
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| Protein GI | 154250987 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.0606405 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAATT TCTTTATCGA CCGTCCCGTC TTTGCCTGGG TCGTTGCCAT CGCCATCATG
CTGGCGGGCA CGCTTTCGAT CATGCAGTTG CCGATCGAGC AGTATCCGCC GATTGCACCG
GCCTCCGTGA CCGTTACCGG CACCTATCCG GGCGCATCCG CGCGGACGGT CGAAAACACG
GTGACGCAGG TCATCGAACA GAAAATGAAC GGCATCGACT ACCTGCGTTA CATGTCGTCG
ACCAGCGACT CTTCGGGCAC CGGCACGGTA ACGCTTACAT TCGAACCTGA AGCCGATCCG
GATATTGCCC AGGTGCAAGT GCAGAACAAG CTGCAATCGG CTCTGCCTCT CCTGCCGCAG
GAAGTGCAGC AGCAGGGTGT GACGGTTGCG AAATCGGCCA GAAACTTCCT GATGGTGATC
GCGTTCATTT CGACGGATGG CCGGATCAAT GAAACCGAGA TCGCCGACTA CGTCGCATCG
CACATTCAGG ATCCGATAAG CCGCGTGAAC GGCGTAGGCG AGATTCAGCT TTTCGGGCCG
CAGCACGCCA TGCGTATCTG GATCGATCCG CAAAAACTGC AAAGCTACCG AATATCGATA
TCGGATATCA CCACGGCGAT CAGGGCGCAG AATGCAGAAG TGTCGGCAGG ACAGCTCGGT
GCCCGCCCCG CGGTGGAAGG CCAGCAGCTG AACGCCACAG TGACGGCGCA AACGCGCCTC
GAAACGCCGG CCCAGTTCGA AAACATCCTG CTCCGGGTCA ATGAGGATGG ATCGCAGGTG
CGCCTCAAGG AGGTGGCCCG CGTCGAACTC GGCTCCGAAA ACTATCAGAC CATCGGACGC
TATAATGGCA ATCCGGCCTC CGGTATTGCC GTCCGGCTGG CATCGGGCGC GAACGCGCTC
GACACGGCGG AGGCCGTTCG CACGAAAATT GCCGAACTCG AACCCTTCTT CCCCGAGGGG
TTGGAGGTCG TCATACCGTA TGACACGACG CCCTTCGTCC GTCTCTCGAT CAACGAAGTG
ATCAAGACGC TCGCGGAAGC GATCGTTCTT GTCATTCTCG TAATGTATCT GTTCCTTCAG
AACATCCGGG CGACATTCAT TCCCGCCATC GCCGTCCCCG TCGTTCTTCT GGGCACGTTC
GGCATTCTCG CGGCGTTCGG TTTCACGATC AACACGCTCA CGATGTTCGG CATGGTGCTG
GCGATCGGTC TTCTCGTGGA TGACGCGATC GTCGTGGTCG AAAACGTCGA GCGTGTTATG
AGCGAGGAAG GGCTGTCGCC GCGGGAAGCG ACGCGGAAAT CGATGGGCCA GATCACCGGG
GCGCTTGTCG GCATCGGCCT TGTGCTGAGC GCCGTTCTCA TTCCGATGGC TTTTTTTGCC
GGGTCTACCG GTGCGATCTA CCGTCAATTC TCGCTGACGA TCGTATCGGC GATGGTGCTG
TCCGTGATTG TCGCGCTGGT TCTGACGCCG GCGCTCTGCG CCACGCTCCT GAAGCCGGTT
AAGAACCACG GCGAGGAAAA ACGCGGTTTC TTCGGCTGGT TCAATCGCAT GTTCGACCGG
AGCGGACGCT CATACGACGT GGGTGTGCGC CGCTTTCTGG CGGGGCCGGT GCGTTACATG
GTCGTCTACG GAGTCATCGT CGTCATCCTC GGCGCGCTCT TTCTGCGGCT CCCGACCTCG
TTCCTGCCGG ACGAGGATCA GGGTTTCATG ATGACTCTGG TTACGACACC GGCAGGCGCG
TCCGCCGAGC GCACGCTTGA ATCCATGAAG CTCGTAGAAA ATTATTTTTT GGAGCAGGAA
AAGGATTCCG CGCAGGGCCT GTTTTCGGTC GTGGGATTCA ACTTCGCCGG CGCGGGCCAG
AATTCAGCGA TGGCCTTCAT CAACCTGAAG CCTTTCGACG AACGCGGAAC GGACGAGACA
AGTGCCTTCA GCGTTGCGCA GCGAGCCATG GGCTTCTTCG GCGCCATGAA GGACGCGATG
GCCTTCGCCA TCATTCCGCC GTCGATCACG GAACTCGGTA CGGCTTCGGG TTTCGACATG
CAACTCGTCG ACCGGGCAGG GATCGGTCAC GAGAAGCTTA TGCAGGCGCG CAACCAACTT
CTCGGACTTG CCGCGCAAAG TTCAAAGCTC GTCGGCGTGC GGCCGAACGG ACTGGACGAT
ATGCCGGAGT TCCGCGTCGA TGTGGACCAG GAGAAAGCTG CGGCGCTCGG CCTCGCGCTT
TCCGACATCA ACAACACATT GTCCGCTGCC TGGGGATCGA GCTACGTCAA CGATTTCATC
GACGAGGGGC GCGTCAAGAA AGTCTACGTC CAGGCCGACG CGCCTTTCCG GATGCTGCCG
GAGGACATCT ACAAGCTTCA TGTGCGCAAT GCGAACGGCG AAATGGTGCC TTTCTCCGCC
TTCGCGGAAA CGCACTGGAC ATATGGATCG CCACGGCTCG AGCGATTCAA CGGCTCCTCC
TCGCGTCAGA TCCAGGGTTC GGCCGCGCCC GGCGTAAGCT CCGGCGATGC AATGGCCGAG
ATGGAAAGGC TGATGGCGCA ATTGCCCGAA GGCGTCGGCT ATGAATGGAC CGGGTTGTCC
TACGAGGAGC GGCAGGCGGG CGCGCAGGCC CCTTCTCTCT ATGCGCTTTC GCTACTGTTC
GTTTTTCTCT GTCTTGCCGC GCTCTATGAA AGCTGGTCGA TCCCGGTTTC GGTGATGCTC
GTCGTTCCCC TGGGCGTTCT CGGTGCCGTG CTTGCGGCCA CCATGACCGG TCTTTCGAAC
GACGTTTATT TCCAGGTCGG CCTGCTCGTC ACGATCGGCC TTGCCGCGAA GAACGCAATC
CTGATCGTCG AATTTGCGAA GTCGCTCTAC GAGCGCGGTG AGAGCCTTGC CGACGCTACG
ATTCAGGCGG CGCGGCTGCG CCTTCGGCCG ATCATCATGA CCTCGCTTGC CTTCACGCTC
GGTGTGCTGC CGTTGGCGAT TGCTTCGGGC CCCGGCTCGG GCAGCCAGAA CGCGATCGGC
ATCGGCGTCA TGGGCGGCAT GATCTCCGCG ACGGTTCTTG CCATCTTCTT CGTGCCGCTC
TTCTTCGTCG TGGTGGAGCG TATCTTCCCG AAGCGGGTGG CGACGACTGC GCCGGAAACG
GAAACAGACC GATGA
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| Protein sequence | MANFFIDRPV FAWVVAIAIM LAGTLSIMQL PIEQYPPIAP ASVTVTGTYP GASARTVENT
VTQVIEQKMN GIDYLRYMSS TSDSSGTGTV TLTFEPEADP DIAQVQVQNK LQSALPLLPQ
EVQQQGVTVA KSARNFLMVI AFISTDGRIN ETEIADYVAS HIQDPISRVN GVGEIQLFGP
QHAMRIWIDP QKLQSYRISI SDITTAIRAQ NAEVSAGQLG ARPAVEGQQL NATVTAQTRL
ETPAQFENIL LRVNEDGSQV RLKEVARVEL GSENYQTIGR YNGNPASGIA VRLASGANAL
DTAEAVRTKI AELEPFFPEG LEVVIPYDTT PFVRLSINEV IKTLAEAIVL VILVMYLFLQ
NIRATFIPAI AVPVVLLGTF GILAAFGFTI NTLTMFGMVL AIGLLVDDAI VVVENVERVM
SEEGLSPREA TRKSMGQITG ALVGIGLVLS AVLIPMAFFA GSTGAIYRQF SLTIVSAMVL
SVIVALVLTP ALCATLLKPV KNHGEEKRGF FGWFNRMFDR SGRSYDVGVR RFLAGPVRYM
VVYGVIVVIL GALFLRLPTS FLPDEDQGFM MTLVTTPAGA SAERTLESMK LVENYFLEQE
KDSAQGLFSV VGFNFAGAGQ NSAMAFINLK PFDERGTDET SAFSVAQRAM GFFGAMKDAM
AFAIIPPSIT ELGTASGFDM QLVDRAGIGH EKLMQARNQL LGLAAQSSKL VGVRPNGLDD
MPEFRVDVDQ EKAAALGLAL SDINNTLSAA WGSSYVNDFI DEGRVKKVYV QADAPFRMLP
EDIYKLHVRN ANGEMVPFSA FAETHWTYGS PRLERFNGSS SRQIQGSAAP GVSSGDAMAE
MERLMAQLPE GVGYEWTGLS YEERQAGAQA PSLYALSLLF VFLCLAALYE SWSIPVSVML
VVPLGVLGAV LAATMTGLSN DVYFQVGLLV TIGLAAKNAI LIVEFAKSLY ERGESLADAT
IQAARLRLRP IIMTSLAFTL GVLPLAIASG PGSGSQNAIG IGVMGGMISA TVLAIFFVPL
FFVVVERIFP KRVATTAPET ETDR
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