| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0504 |
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| Symbol | |
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| ID | 5454915 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 544034 |
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| End bp | 546019 |
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| Gene Length | 1986 bp |
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| Protein Length | 661 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640876070 |
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| Product | ribonucleotide-diphosphate reductase subunit alpha |
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| Protein accession | YP_001411784 |
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| Protein GI | 154250960 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
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| TIGRFAM ID | [TIGR02506] ribonucleoside-diphosphate reductase, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 0.480771 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAACG ATACGTCGAA AGCGGTGGAT ATGAGTGAGG TCGAAGCCAG TGTGTCAGCC
ATTATCACAG GCGAGCGGGC GGTGAGCCGC GTGCGCGCTG AATCGCGGCG CGTGGCGGAA
CCCGAAATGA TGTTCGGCGA CCAGTATCAG GCCGTGCAGA TGGGCGGCCG CCCGACTGTA
CGCGTCGATC ATGGCCGCGA TGCACTGCTG ACCGAGTTCG GCAAGGCAAC GCTCCGCGAT
CGCTATCTGA TGCCCGGCGA GTCCTATCAG GACATGTTTG CCCGCGTGGC CTCCTTCTAT
GCCGACAAGG GCGATGCCGG CCACGCGCAG CGCCTCTATG ACTACATTTC CAAGCTCTGG
TTCATGCCGG CGACGCCCGT CCTCTCCAAT GGCGGTACGC AGCGCGGCCT GCCCATCTCC
TGCTTCCTCA ATGAAGCCTC GGACAGCCTC GACGGCATCG TCGGCCTCTG GAACGAAAAT
GTCTGGCTCG CGGCCAAGGG CGGCGGCATC GGCTCCTATT GGGGCAATCT GCGCTCCATC
GGCGAGACGG TCGGCGGCAA TGGCAAGACC TCCGGCATCA TTCCCTTCAT CCGCGTGATG
GATTCGCTGA CGCTCGCCAT CAGCCAGGGT TCGCTTCGCC GCGGCTCGGC GGCGGTCTAT
CTCCCGATCG ACCATCCCGA GATCGAGGAA TTCATGGAAA TGCGCCGCCC CACGGGTGGC
GATCCGAACC GCAAGGCGCT GAACCTCCAT CACGGCGTGC TCGTGTCGGA TGCCTTCATG
CGCGCCGTCG AGGCGGATGC CGAATGGCAG CTCAAGAGCC CGAAGGACAG GTCGGTCCAG
AAGACCGTCT CCGCCCGCTC GCTCTGGATT CGCCTCCTCA CCTCGCGCAT CGAAACCGGC
GAGCCCTACA TCATCTACAA GGACACCGTG AACAACGCGC GCCCCGAGCA TCACAAGCTC
GCCGGCCTCG AAGTGAAAAC GTCCAATCTC TGCGCCGAAA TCACGCTCCC CACCGGCATC
GACCAGCATG GCGAGCAGCG CACGGCCGTC TGCTGCCTGT CCTCGCTCAA TCTCGAAACC
TATAATGAGT GGCAGGACCA TCCGACCATT ATCGAAGACG TGATGCGCTT CCTCGATAAC
GTCCTGCAGG ACTTCATCGA CCGCGCGCCG GACGATATGC GCCGCGCCAA ATACGCCGCC
ATGCGCGAGC GTTCGGTTGG CCTCGGCGTC ATGGGCTTCC ACTCCTATCT TCAGGCCAAC
ATGATCCCCT TCGAGGGCGT GATGGCGAAG GTCTGGAACA AGCGCATGTT CGCCCGCATC
AAGGAAGGCG TGGACGCCGC TTCGAAGAAG CTCGCCGAAG AGCGGGGCGC CTGCCCGGAT
GCCGCCGAAT ACGGCTTCAA CGAGCGCTTC TCCAACAAGA CGGCGATCGC GCCCACCGCC
TCGATCTCGA TCATCACCGG CGGCACCTCG CCGGGCATCG AGCCCATCGC GGCCAACAGC
TTCACCCACA AGACGCTGTC CGGCTCCTTC AACGTCCGCA ACCGTCACCT GACGAAGCTG
CTGGAATTGA AGGGCCGCAA CGACGACGAC ACCTGGTCCT CCATCGTCGT GAACGGTGGC
TCGGTGCAGC ATCTCGATTT CCTGTCGGAT GAGGAGAAGG ACGTCTTCAA GACCGCCTTC
GAACTCGACC AGCGCTGGGT CATCGAACAT GCGGGCGACC GCGCGCCCCT CGTCGATCAG
GCGCAGTCGG TCAACCTCTT CCTCGCCGCC GACGTTCACA AGCGAGACCT GCACAAGCTC
CATTTCATGG CCTGGCAGCA CGGCGTGAAG AGCCTCTATT ACTGCCGCTC GCTCTCGATC
CAGCGCGCCG AAAAGGCCGA AGTCGTCTCG CTCCTGCCCG GCAAGGTGCT GGACGTGCTG
ACCCTCGACC AGGTCGCCGC CGAAGCGCAA TCGAACGACT ACGAAGAATG CCTCGCCTGT
CAGTAA
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| Protein sequence | MLNDTSKAVD MSEVEASVSA IITGERAVSR VRAESRRVAE PEMMFGDQYQ AVQMGGRPTV
RVDHGRDALL TEFGKATLRD RYLMPGESYQ DMFARVASFY ADKGDAGHAQ RLYDYISKLW
FMPATPVLSN GGTQRGLPIS CFLNEASDSL DGIVGLWNEN VWLAAKGGGI GSYWGNLRSI
GETVGGNGKT SGIIPFIRVM DSLTLAISQG SLRRGSAAVY LPIDHPEIEE FMEMRRPTGG
DPNRKALNLH HGVLVSDAFM RAVEADAEWQ LKSPKDRSVQ KTVSARSLWI RLLTSRIETG
EPYIIYKDTV NNARPEHHKL AGLEVKTSNL CAEITLPTGI DQHGEQRTAV CCLSSLNLET
YNEWQDHPTI IEDVMRFLDN VLQDFIDRAP DDMRRAKYAA MRERSVGLGV MGFHSYLQAN
MIPFEGVMAK VWNKRMFARI KEGVDAASKK LAEERGACPD AAEYGFNERF SNKTAIAPTA
SISIITGGTS PGIEPIAANS FTHKTLSGSF NVRNRHLTKL LELKGRNDDD TWSSIVVNGG
SVQHLDFLSD EEKDVFKTAF ELDQRWVIEH AGDRAPLVDQ AQSVNLFLAA DVHKRDLHKL
HFMAWQHGVK SLYYCRSLSI QRAEKAEVVS LLPGKVLDVL TLDQVAAEAQ SNDYEECLAC
Q
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