| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0501 |
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| Symbol | |
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| ID | 5456063 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 541167 |
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| End bp | 541937 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640876067 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001411781 |
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| Protein GI | 154250957 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 0.472606 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCTCG GTCTCAAGGG CAAGAAGGCG ATCGTCACCG GCGGCACGCG CGGCATCGGT
CGCGCCATCG CGGAAACGCT GGCAAGGGAG GGCTGCGATG TCTCGATCTG CGCGCGCAAT
CAGGATCAGG TCGATGAGGC GGTCGCCGCG CTCTCTAAGC TCGGCGTGAA GGCAACCGGC
GGCATCGCCG ACATCGCCGA TGGCGAGGGC CTGAAGAAGT GGATCGCCGA TACGGCAAAG
GCCACGGGCG GCCTCGACAT TCTGGTCGCC AACGCCTCGG CGCTCGCGAA CGGCAATGAC
GAGAAGTCCT GGCGCGCCTG CTTCGAAATC GACGTGCTCG GCGCCGTCAA TGCCTTCGAG
GCGGCGCTTC CCTTCCTCAC CGAAGCCGCG AAGAAATCCG GCGATGCGTC GGCTACCTTC
ATCTCCTCGA TCTCGGCAGC CGAAAACGAT AACGCCAATG CCTATGGCGC GCAGAAGGCG
GCGCAGATTC ATCTCGCCAA GGGCTATGCC CGCCAGCACG CCGGCAAGCA TGTCCGCGTG
AACACGGTTT CGCCCGGCAC CGTTTATTTC AAGGGCGGCG TCTGGAACAT GATCGAAGAC
CACATGCCGG ACATGTTCAA GCAGGCAATG GAACGCAACC CGACCGGCCG CATGGCGACG
CCGCAGGACA TCGCCAACGC GACAGTCTTC CTCGCAAGCC CCGCTTCGTC CTTCACGACG
GGCACGAACC TCATCGTTGA CGGCGCCATC TCGCGGCGCG TGAATTTCTG A
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| Protein sequence | MDLGLKGKKA IVTGGTRGIG RAIAETLARE GCDVSICARN QDQVDEAVAA LSKLGVKATG
GIADIADGEG LKKWIADTAK ATGGLDILVA NASALANGND EKSWRACFEI DVLGAVNAFE
AALPFLTEAA KKSGDASATF ISSISAAEND NANAYGAQKA AQIHLAKGYA RQHAGKHVRV
NTVSPGTVYF KGGVWNMIED HMPDMFKQAM ERNPTGRMAT PQDIANATVF LASPASSFTT
GTNLIVDGAI SRRVNF
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