| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0478 |
|---|
| Symbol | |
|---|
| ID | 5455764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 518841 |
|---|
| End bp | 520004 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640876044 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_001411758 |
|---|
| Protein GI | 154250934 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 73 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGGTT TTCTGCGCAG CGAACTGACG GCGGAGGAAT GTGCGTTCCT CGACAGCGCC
GCCGCCTTCT CCCGCGCCAC TGTCGCGCCC AATGCCGCCG CGTGGGAGCG TGAGCGCCGC
CAGCCGGTCG AGGCTCTGCG CGAGGCCGCC GCCCTCGGCC TTCTCCGCCT CGAAACACCG
AAGGACGCAA GCGGCCTCGG CCACCGCTAT ATGGTCAAGC TCGCGCTTTG CGAGGAAATG
TCCCGCGCCG ACATGGCTTT CGCTTTCTCG CTGGTGAACA CGCAGAACGT CGCCGCCCGT
CTCGCATTCT CGGCCACTGC CCGCCACCGC GAGGAGCACG TCCCCGCCCT CATGTCCGGC
GAAATCTTCG GTGCCACCGC CCTGAGCGAG CCCGGCGCCG GCAGCGACTT CTCCGCCATC
CGCACAAGCG CAACGAAAAC GGATGGCGGC TGGCGCCTCG ATGGCGAAAA GGGCTGGATC
ACAAACGCCG GCATCGCCGA TCTCTTCATT ACCTATGTGC AGACGGACCC CGCCGCCGGC
TGGCGCGGCA TCGCCTGCTT CCTGGTCGAT GCGCGCCGTC CCGGCTTCCG CCGCGCCGAG
CCTTATGCGC TCATGGGCGG CCACGCCATC GGCGCGGGCG GCTTCACGCT CGAAAATTAT
CTGGCGCCGG AAGATGACAT GCTCGCGGGG CCCGGCGATG CCTTCAAGCT TGCCATGAAA
GGCGTCAACG GCGCCCGCGT CTATGTCGCC GCCATGTGCG CCGGTCTCCT CGCCTCCAGC
CTCGAAACCG CGCTCGCCTA TGGTGCCGCG CGCAAGACCT TCGGCAAATC GCTGCTCGAA
CATCAGGGGC TCAATTGGTC GCTCGGCGAT GTCGCGAACG ACCTCGAAGC CCTGCGCGGC
CTCACGCTCC ATGCCGGCCG CCTCATCGAC AGCGGCGAGG ATGCAGTCAT GGCCGCCGCC
CATGCGAAAA AATTCGCCGG CCGCGTCACG CTCCCCCGCA TCGCCGATTG CATCCAGTCG
ATGGGCGCCA CCGGTCTCCG CGAGGAACAC GGCCTCGCCC GCCACCTCGC CTGCGCCAAA
ATCGCCGCCT ATACCGACGG CAGCACCGAA ATCATGAACG ACCGCATCGG CGCGGGCCTG
CTGAAGACCT ATGGGCCGGA CTAA
|
|---|
| Protein sequence | MTGFLRSELT AEECAFLDSA AAFSRATVAP NAAAWERERR QPVEALREAA ALGLLRLETP
KDASGLGHRY MVKLALCEEM SRADMAFAFS LVNTQNVAAR LAFSATARHR EEHVPALMSG
EIFGATALSE PGAGSDFSAI RTSATKTDGG WRLDGEKGWI TNAGIADLFI TYVQTDPAAG
WRGIACFLVD ARRPGFRRAE PYALMGGHAI GAGGFTLENY LAPEDDMLAG PGDAFKLAMK
GVNGARVYVA AMCAGLLASS LETALAYGAA RKTFGKSLLE HQGLNWSLGD VANDLEALRG
LTLHAGRLID SGEDAVMAAA HAKKFAGRVT LPRIADCIQS MGATGLREEH GLARHLACAK
IAAYTDGSTE IMNDRIGAGL LKTYGPD
|
|---|
| |