| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0411 |
|---|
| Symbol | |
|---|
| ID | 5454004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 444395 |
|---|
| End bp | 444772 |
|---|
| Gene Length | 378 bp |
|---|
| Protein Length | 125 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640875976 |
|---|
| Product | LrgA family protein |
|---|
| Protein accession | YP_001411691 |
|---|
| Protein GI | 154250867 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1380] Putative effector of murein hydrolase LrgA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.305812 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 70 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCGCGCAC CGTTCGGCCT CATCCTCGCT TTCGCCGTGC TCGTGGCCTG CGATCTCGCG
GGGAAGCTCT TCGTCCATGA GCTGGGCCTT CCCGTGCCGG GCACCGTCAT CGGCATCCTG
ATCCTGCTGA CCGGGCTTGT CGTGCTGCGC CGCGTGCCCG CCAATCTGCA ACGCGTCGGC
GAATTTCTGC TCGCCCACCT CAATCTCTTC TATATCCCGG CAGGCGTCGG CGTGATGGCC
TATGTGGCGC TGCTGGCAGA CGACCTGTGG CCGATTGTGG CCGCGCTCTT CGCCAGCACC
TTCCTCGCCA TGCTCGCCGC CGCCTTCGCC TTCAGCTGGA CGGCGAAGCT GCAGGGCAGG
GAGGGAGAGG GCGAATGA
|
|---|
| Protein sequence | MRAPFGLILA FAVLVACDLA GKLFVHELGL PVPGTVIGIL ILLTGLVVLR RVPANLQRVG
EFLLAHLNLF YIPAGVGVMA YVALLADDLW PIVAALFAST FLAMLAAAFA FSWTAKLQGR
EGEGE
|
|---|
| |