| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0358 |
|---|
| Symbol | |
|---|
| ID | 5456368 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 382262 |
|---|
| End bp | 384070 |
|---|
| Gene Length | 1809 bp |
|---|
| Protein Length | 602 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640875923 |
|---|
| Product | signal transduction histidine kinase |
|---|
| Protein accession | YP_001411638 |
|---|
| Protein GI | 154250814 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0784] FOG: CheY-like receiver
[COG3920] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 71 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTCCG ACGGCAATTT GCTCCAGGCT CTCCCTGTAG CGGTCTATAC GACCGACGCC
GAAGGGCGCA TCACCTTTTA TAACGAAGCG GCCGCCGCCT TGTGGGGTCA CAGGCCCGAG
CTCGGCACCA GCATGTGGTG CGGATCCTGG CGGCTCTTCT GGCCGGATGG GCGGCCCTTG
CCGCATGATG AATGCCCGAT GGCCATTACT CTGCGCGAGC AGCGCGAGGT GCGCGGCGTG
GAGGCCGTCT TGGAGCGGCC GGACGGCACG CGCGTCCTCT TCCTCCCTTA TCCGACACTG
CTGAGAGATG AAGCCGGCCG CGTCACCGGC GCGATCAACC TGCTGGTCGA AGTCGCGGAC
CGGAAAGAGG CTGAAGCGGA GCGCGCACAA TTGGCCGCGA TCGTCTCCTC TTCGGACGAT
GCGATCATCA GCAAGACTCT GACCGGCAAA ATCACCTCCT GGAACGCGGG GGCGACCCGG
ATTTTCGGCT ATGAGCCGCA GGAGATTATC GGACAGTCGA TCCTGCGCAT CATTCCCCCC
GATCTGCAGG ACGAAGAGAA GGACATTCTC GCGAAAATCC AGCGCGGTGA ACGCATCGAG
CATTACGACA CAGTGCGCGT CGCGAAAGAC GGCACTCTTT TGAATATATC GCTCACCGTC
TCACCGCTGA TCGACGGAAG CGGAAAGGTG GTCGGCGCCT CCAAAGTGGC GCGCAACATC
ACCGAACGAA AGCGCGCCGA GGAAATGCAG CGGCTGCTCT TCGATGAGCT GAATCACCGC
GTCAAGAATA CGCTGGCGAC CATTCAGGCA ATTGCCAGCC AGTCGCTTCA GAAAGCCGCC
AGTCCGAGCG ATTTCGTCAC GAGCTTCAAC GGGCGCGTGG AAGCCCTCGG CCGTGCGCAT
GAGCTTCTCG TGCAAGGTCA GATGTCCGGC GCGGACGTTG CCGGTATCGT GAGGGAGCAG
GTCGTGCTGG GCGATACCGA AGGAGCGCGC GTCTCCTGCT CCGGGCCTTA TGTGAGGCTT
GAGCCGCGGG TCGCGGTGCA AGTCGCGCTT GTGCTGCATG AACTTGCCAC CAATGCCCGT
AAATACGGAG CCTTGTCGAT CGCGGACGGA CATCTTTCGA TCGAATGGAG GCTAGACATT
CAAGACGAGC GAAAACTTGT GCTCGAATGG AAGGAAAGCG GCGTCAGGAA CGTGCGGGTT
CCGACATCGC ATGGATTTGG GACCATCCTC ATCCAGCGTA CCGTCGAAGC GCATGGCGGC
GAGGCGTCGA TCCACTACGG CGCCGACGGT ATTTCCTGTC AAATCGGGTT GCCTCTGCCG
CAGTCCGAGG AGGCGGGCCG GGCCGGCTCC GTGGTAGCCG CCTTCATGGA AGAGGGCCAC
AGGCGGACAG CAGCTGAGGC TTCGAGCCGC GACCTGAGAG GTACGCGGGT ACTGCTCATA
GAAGACGAGC CGCTCATCGC AATGGATACG GAATCGCATC TTGTTTCGGC GGGCTGTGAA
GTTGTCGGTC TGGCCGCCAC GATAGAGGAA GCCCGGCAGC TCATCGCGGA CAAGGTCTTC
GATATTGCTC TCGTCGATGC CAACCTGTCG GGCGAACCGG TTGATGAAAT AGCCGTCGCT
CTGGCCCGCA AGGGGATCCC ATTCGCCTTC GCCACAGGCT ACGGCGCTGA AGCATTGCCT
CCGGCCTTTC GGGATGCCCC CATACTCACC AAGCCGTTCA GCCCGCAAGC GCTGCTGGCG
GAAGTAGCGG CGTTGCGTGC CCGAAACGCA AGGCCTGGCA TCATCCCGTT GCGTCCGAAA
GCAGGCTAG
|
|---|
| Protein sequence | MISDGNLLQA LPVAVYTTDA EGRITFYNEA AAALWGHRPE LGTSMWCGSW RLFWPDGRPL
PHDECPMAIT LREQREVRGV EAVLERPDGT RVLFLPYPTL LRDEAGRVTG AINLLVEVAD
RKEAEAERAQ LAAIVSSSDD AIISKTLTGK ITSWNAGATR IFGYEPQEII GQSILRIIPP
DLQDEEKDIL AKIQRGERIE HYDTVRVAKD GTLLNISLTV SPLIDGSGKV VGASKVARNI
TERKRAEEMQ RLLFDELNHR VKNTLATIQA IASQSLQKAA SPSDFVTSFN GRVEALGRAH
ELLVQGQMSG ADVAGIVREQ VVLGDTEGAR VSCSGPYVRL EPRVAVQVAL VLHELATNAR
KYGALSIADG HLSIEWRLDI QDERKLVLEW KESGVRNVRV PTSHGFGTIL IQRTVEAHGG
EASIHYGADG ISCQIGLPLP QSEEAGRAGS VVAAFMEEGH RRTAAEASSR DLRGTRVLLI
EDEPLIAMDT ESHLVSAGCE VVGLAATIEE ARQLIADKVF DIALVDANLS GEPVDEIAVA
LARKGIPFAF ATGYGAEALP PAFRDAPILT KPFSPQALLA EVAALRARNA RPGIIPLRPK
AG
|
|---|
| |