| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0266 |
|---|
| Symbol | |
|---|
| ID | 5454257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 286894 |
|---|
| End bp | 288081 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640875830 |
|---|
| Product | succinyl-diaminopimelate desuccinylase |
|---|
| Protein accession | YP_001411546 |
|---|
| Protein GI | 154250722 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 59 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCGC CCGCTTCATC CCCCGCCTCC CCCTACGATC CGCTCGACAT TGCGGTCGAG
CTGATCCGCT GTCCGAGCGT CACGCCGGAC GAAGGGGGCG CGCTGGGCGT GCTGGAAAAA
TGGCTGGCGC CACTCGGCTT CAAATGCGAG CGGATGCGCT TTTCGGCGGA GGGAACGCCC
GATGTCGACA ATCTCTATGC AAGGCTCGGT TCGGGCCATC CTCATTTCTG CTTCGCCGGG
CACACGGATG TAGTGCCTGT CGGCCAGGCG GATGCGTGGA GCGTCGATCC CTTCGCCGCC
GACATCAAGG ATGGGCGCCT CTATGGACGC GGCGCCGCCG ACATGAAAAG CGCCGTGGCA
AGCTTCGTCG CGGCGGCCGA GCGTATCTCG CGGGAAGGCT TTCAGGGGTC GATCAGCCTG
CTCATCACAG GCGATGAGGA AGGGCCTAGC ATCAACGGCA CCAGGAAGAT GCTGGAAAAG
CTCGCCGCGC GAAACGAGAC GATCGACCAT TGCATCGTCG GCGAACCGAC CTCTGTCGAG
AAGCTCGGCG ACATGATCAA GGTGGGACGG CGCGGCAGCA TAAATGGCTG GCTGACAGTG
CAGGGCACAC AGGGCCATGT CGCCTATCCG CATCTCGCCG ACAATCCCGT CCCCCGGCTT
CTTGAAATGC TGAGGCGGCT CGATGCCCAT GTTCTCGACG AAGGAACGGA CCATTTCCAG
CCGTCGAACC TTGAAGTGAC AACCGTCGAT ATCGGCAACA CGGCGACCAA TGTCATTCCG
GGGTCGGCGC GGGCGACCGT CAATATCCGC TTCAACGATC TTCATACCGG CGCCTCGCTC
GACAAGTGGA TGCGCGGCGT GCTCGATGCG GTGACGGCGG AGATGGGCGG CAGCTACTCC
TTCAAGACGA GCGTTTCGGG CGAGGCTTTC ATCACGGAGC CCGGCGCCTT TTCGGCCCTG
ATCGCCGAAG CGGCGAAAGA AGTGACAGGC ATTACGCCGG AGCTTTCGAC AACCGGAGGC
ACCTCCGATG CCAGGTTCAT TCGGGCCTAT GCGCCGGTGG TCGAAATCGG CCTGCCGAAT
GCGACGATGC ACAAGGCGGA CGAAAACACC GGCGTCAGCG AGATAAGACA GCTTGCCGAT
ATCTACGAGA CGGTCTTGCG CGGCTACTTC GCCGGGCGGG CATCTTGA
|
|---|
| Protein sequence | MTAPASSPAS PYDPLDIAVE LIRCPSVTPD EGGALGVLEK WLAPLGFKCE RMRFSAEGTP
DVDNLYARLG SGHPHFCFAG HTDVVPVGQA DAWSVDPFAA DIKDGRLYGR GAADMKSAVA
SFVAAAERIS REGFQGSISL LITGDEEGPS INGTRKMLEK LAARNETIDH CIVGEPTSVE
KLGDMIKVGR RGSINGWLTV QGTQGHVAYP HLADNPVPRL LEMLRRLDAH VLDEGTDHFQ
PSNLEVTTVD IGNTATNVIP GSARATVNIR FNDLHTGASL DKWMRGVLDA VTAEMGGSYS
FKTSVSGEAF ITEPGAFSAL IAEAAKEVTG ITPELSTTGG TSDARFIRAY APVVEIGLPN
ATMHKADENT GVSEIRQLAD IYETVLRGYF AGRAS
|
|---|
| |