| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0248 |
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| Symbol | |
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| ID | 5454630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 267984 |
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| End bp | 269864 |
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| Gene Length | 1881 bp |
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| Protein Length | 626 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640875811 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001411528 |
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| Protein GI | 154250704 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAAC CTCTCTCCGT CTCACGGCGG CAGATGCTTG CACTGACCGG TGGCGCTGCT
GTGGCGGCGT ATCTGCCGTC ATCCGGGTTA CAAGCCGCAC CCGCCCGCCG AAGCCACGGC
ATGTCGATTT TCGGAGAACT TAAATACGGC GCGGATTTCC AGCACTTCGA CTATGTGAAT
CCGTTGGCGC CGAAGGGGGG CGTGTTTTCG CAGATCGGGC CCGTTGCCGC TTTCAACGCT
TCGTTTTATA CGTTCGACAC CCTTAACGGA TATATCCTGA AGGGAAACGC CCCACAGGGT
CTGCATCATA TCTTCGATAC ACTTATGGTG CGCGCGTTCG ACGAACCCGA CGCGCTTTAC
GGGTTGCTCG CAGAGAGTGT CGAGGCGTCG GACAATGGCA ATTTGTACAC GTTCCATCTG
CGCGATGGGG CACGCTTTCA CGACGGAACC AAGGTCACAG CGGAAGATGC CGCCTTTTCA
TTCGCTCTTT TGAAAGAGAA GGGACACCCG CTCATTGCGC AGAATTTGAA GGAAATGGCC
GCTGCCGAGG CGCGCGACGA GGCGACACTC GACATCCGTT TTACCGGAGC GCAAACGCGG
GACCTTCCTC TTTTCATCGC AGGCGTGCTG CCAGTGTTCT CGAAGTCGTT TTACACCGAG
AATGATTTTT CGGCTGCTTC GCTGAAGGCG CCGCTGGGGA GCGGCCCCTA CCGCATCGGG
GACTTCCGCG CTTCCCGCTT CATCAACTAC CAAAGAGTGG ATGAGTACTG GGGCCGCGAT
CTTCCGGTGA ACAGAGGGAA GTGGAATTTC GACCGCCTGC GCTATGAGTA TTTTCGTGAC
CGCACGGCAC AGTTCGAAGC GTTCAAGGCG GGGAATTATC TCTTCCGGGA AGAGTTCACA
TCGAAAACCT GGGCGACGGA ATATAACTTT CCTGCCGTCA AGGACGGACG CGTGAAACTT
GTGACGTTGC CGGACAATAC GCCTTCCGGA GCACAAGGCT GGTTCCTCAA CACACGGAGA
GAGAAGTTCC AGGATCGCCG GGTGCGGGAA GCTCTTGGCC TTGCTTTCGA TTTCGAGTGG
ACGAACAAGA ATCTCTTCTA CGGCCTGTAC AAGCGCACCG AGAGCTATTT TGAAAACTCT
CCGATGAAAG CGAGCGGCGA GCCCGACGGC GCGGAACTGG CTTTGCTGGA ACCGTGGCGG
GATGACCTTC CGCCTGAGGT ATTTGGCGCG GCCATCACGC CGCCTGCGAG CGACGGATCC
GGGCAGGACC GCCGGCTGCT CCGGCGCGCA GCAAGCTTGC TCGACGAATC CGGATGGCGC
ATCGCGCGAG GCGGGCTTCG CCGCAATGAA GCGGGAGAAG TGCTTTCAGT CGAATTTCTC
GACGATGAGC CAATGTTCGA GCGGATCGTC GCGCCGCTCG TGAAGAACCT CAAGCTTCTC
GGCATTGACG CCCGGATCAG ACAAGTCGAT ACGGCTCAGT ATCAAGACCG TATGAATAAC
TACGATTTCG ACGCTTCGAT AAGGCGCTAT TCTCTCGGAT TGACACCCGG CATCGAAATT
CGAAGCTATT GGCATTCCGA TTTCGCAAAT GTCCCGGGCG GCCGCAATCT CTCGGGGATT
TCGAATCCTG CAATCGATGC ATTGATCGAA AAGATCATCG CGGCGGATAA TCGTGAGGAC
CAGGTCGTCG CGGCGCGGGC TCTCGACCGT GTGCTGCGGG CGGGACATTA CTGGATTCCC
CAATGGCACA AGAACCTCCA TCATCTCGCG TTCTGGGACG TATTTGCATG GCCCGACGTC
AAACCGGCCT ATGACCGCGG GGTTGAGGCC ACCTGGTGGG CCGCCACGGA AGAGGCCATC
CCTTCGGGCA GTGAGGACTG A
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| Protein sequence | MKKPLSVSRR QMLALTGGAA VAAYLPSSGL QAAPARRSHG MSIFGELKYG ADFQHFDYVN
PLAPKGGVFS QIGPVAAFNA SFYTFDTLNG YILKGNAPQG LHHIFDTLMV RAFDEPDALY
GLLAESVEAS DNGNLYTFHL RDGARFHDGT KVTAEDAAFS FALLKEKGHP LIAQNLKEMA
AAEARDEATL DIRFTGAQTR DLPLFIAGVL PVFSKSFYTE NDFSAASLKA PLGSGPYRIG
DFRASRFINY QRVDEYWGRD LPVNRGKWNF DRLRYEYFRD RTAQFEAFKA GNYLFREEFT
SKTWATEYNF PAVKDGRVKL VTLPDNTPSG AQGWFLNTRR EKFQDRRVRE ALGLAFDFEW
TNKNLFYGLY KRTESYFENS PMKASGEPDG AELALLEPWR DDLPPEVFGA AITPPASDGS
GQDRRLLRRA ASLLDESGWR IARGGLRRNE AGEVLSVEFL DDEPMFERIV APLVKNLKLL
GIDARIRQVD TAQYQDRMNN YDFDASIRRY SLGLTPGIEI RSYWHSDFAN VPGGRNLSGI
SNPAIDALIE KIIAADNRED QVVAARALDR VLRAGHYWIP QWHKNLHHLA FWDVFAWPDV
KPAYDRGVEA TWWAATEEAI PSGSED
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