| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0239 |
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| Symbol | |
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| ID | 5455084 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 258408 |
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| End bp | 259388 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640875802 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001411519 |
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| Protein GI | 154250695 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 65 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCTGTT TTGCAGACCA AACCCCGCAA TTCACCTTCC GCGCAAAGCG CGGCGGCTGG
CTTGCCGCGG CATCGCTCTG CTCCGCCCTC GCGCTTTCAG GATGTGCATC AACCAGCACC
ACCTCGACCG CCCAGACGCC CAGCGAAGCC GCGCAGGCTC AGATCGACAC ACCGGCGCTC
CGGAATGCAG CCATCGAAAG CACAAAGACT CAGGATTATG TCGCCGCCGC CGCGTACTGG
GGCGCGCTTT ACGAGCGCTC GCCCGACGAT GCTGTTACGA CCGTCAACTA TTCCAAGGCG
CTCCGGCAGA TAGGTTCGAT TGCACAGTCG CTCACCGTGA TGCAGCGCGC TCAGATAAAA
CATCCCGAGA ACGCGGATGT GCTCGCCGAA GCCGGCAAGG CTCTGGCCGC GAGCGGCAGG
CCGGACCAGG CGGTTGCGAT GCTGGAAACC GCCGCCCGCA AATCGCCGCA AGACTGGAGT
ATTCGCTCGG CCCTCGGCGT AGCGCTCGAT CAGACGGGCC GATACGAGGA AGCCAAGAGC
CGCTACAACG AAGCGCTCGA ACTTTCGCCC GACAACCCGT CCGTACTTAC CAACCTCGGC
CTTTCCTATG CGCTGACGGG AGATCTCGAC ATGGCCGAGC GGACACTCCG CAAGGCCGTC
GCAGATACCC GCGCCGACGC TTACGCGCGG CAAAATCTCG CCATCATTCT CGGCCTCAAG
GGAAACTTCG ATGAGGCTGA ACGGCTGGCA CGCGCCGACC TGCCTGCCAA CGTTGCAGAC
GGCAACATCG CCTATCTCCG TTCCATGCTT GCGCAACCGG CATTGTGGAA ACAGCTCGAA
GAGCTTGACC GGCAGCCTGA CACGACAGCA CCCGCACCTC AGCCAACCGG CAAACAACCT
GCCGCTGCGA AAGAAAGCCG TAACGAGAAG GAAGACCAGG TATCGTCGCT GCCGCCGGAG
ACCCGCGTTT CAATTTACTA G
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| Protein sequence | MSCFADQTPQ FTFRAKRGGW LAAASLCSAL ALSGCASTST TSTAQTPSEA AQAQIDTPAL
RNAAIESTKT QDYVAAAAYW GALYERSPDD AVTTVNYSKA LRQIGSIAQS LTVMQRAQIK
HPENADVLAE AGKALAASGR PDQAVAMLET AARKSPQDWS IRSALGVALD QTGRYEEAKS
RYNEALELSP DNPSVLTNLG LSYALTGDLD MAERTLRKAV ADTRADAYAR QNLAIILGLK
GNFDEAERLA RADLPANVAD GNIAYLRSML AQPALWKQLE ELDRQPDTTA PAPQPTGKQP
AAAKESRNEK EDQVSSLPPE TRVSIY
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