Gene Plav_0236 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_0236 
Symbol 
ID5454703 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp254871 
End bp256319 
Gene Length1449 bp 
Protein Length482 aa 
Translation table11 
GC content59% 
IMG OID640875799 
Producttype II secretion system protein E 
Protein accessionYP_001411516 
Protein GI154250692 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.505122 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones67 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTTGGAA GGCGGACCGA AGGTCAGGCA GCAGCGCCGC GTAAGCCGGC AACAGCGCCC 
GCGTCTCCCG CGCCGCGGCA GGAGGGGGCT GTTGCCGCTC CTGCAGCGGC TGTGAAGCCA
TTGCCGCCGA AGCAGGCGCC AAAACCCGCT GCGCCGGCAC GGAGCGATCA CCGCTCGGAA
AATTACTATC AGATCAAAAC GACGATCTTC AACGCGCTGA TCGACACGAT CGATCTCACT
CAGCTGGCCC AGCTGGATTC GGAGAGCGCT CGCGAGGAAA TTCGTGACAT CGTCAACGAA
ATCCTCTCGA TCAAAAACGT CGTCATGTCC ATCTCCGAGC AGGAAGCGCT CCTGCAGGAC
ATTTGCAACG ACGTGCTCGG CTACGGCCCT CTGGAGCCGC TTCTCGCCCG AGATGACATT
GCCGATATCA TGGTGAACGG CTGCGAGCGA ACCTTCATCG AAGTGAACGG CAAGGTCGAA
CTCACCAATA TTCGTTTCCG CGACAACAGC CAGCTGATGA ACATCTGTCA GCGGATCGTG
AGTCAAGTCG GCCGCCGGGT CGATGAATCG AGCCCGATCT GCGACGCACG CTTGCCGGAC
GGCAGCCGTG TGAACGTCAT CGTTCCCCCG CTTGCAATCG ACGGTCCCGC CCTCACCATC
CGCAAGTTCC GTCGCGACAA ACTGATGATG AACGACCTCG TGCAGTATAA TTCGATATCT
CAAGAAGGAG CGGAAGTTCT CGGGATCATC GGAAAGGTCC GCTGCAATGT CTTGATCTCC
GGAGGCACAG GCTCCGGCAA GACGACGCTT CTCAACTGTC TTACCGGCTT CATCGATACC
GACGAACGCG TCATCACTTG CGAAGACGCG GCGGAACTTC AGCTGCAGCA GCCGCATGTC
GTGCGTCTCG AAACCCGGCC GCCAAATCTT GAGGGGCAGG GCCAGGTAAC GATGACGGAG
CTCGTGCGCA ACTGCTTGCG CATGCGCCCC GAACGCATCA TCGTGGGCGA GGTTCGCGGG
CCGGAGGCGT TCGATCTTCT TCAGGCAATG AATACGGGTC ATGACGGCTC AATGGGCACG
TTGCACGCAA ACAGTCCGCG TGAGGCACTG TCTCGTCTGG AGAGCATGAT CACGATGGGT
GGCTATGCTC TCCCTTCAAA AACAATTCGT GAAATGATCT GCGGCTCGAT CGACGTTGTC
ATTCAGGCCG CGCGCCTGCG CGACGGTTCG CGGCGCATCA CGCATATCAC CGAAGTGCTG
GGAACCGAGG GCGACGTCAT CATCACCCAG GATCTTTTCG TTTACGATAT CGAAGGTGAA
GACGAGACGG GACGCATTAT CGGGAAGCAC AAATCTACAG GTATCGCGCG TCCGTCCTTC
TGGGATCGCG CGCGCTATTA CAACCAGCAC CAAGCCCTGG CAGCCGCGCT CGACCGCGCG
CAGGGTTGA
 
Protein sequence
MFGRRTEGQA AAPRKPATAP ASPAPRQEGA VAAPAAAVKP LPPKQAPKPA APARSDHRSE 
NYYQIKTTIF NALIDTIDLT QLAQLDSESA REEIRDIVNE ILSIKNVVMS ISEQEALLQD
ICNDVLGYGP LEPLLARDDI ADIMVNGCER TFIEVNGKVE LTNIRFRDNS QLMNICQRIV
SQVGRRVDES SPICDARLPD GSRVNVIVPP LAIDGPALTI RKFRRDKLMM NDLVQYNSIS
QEGAEVLGII GKVRCNVLIS GGTGSGKTTL LNCLTGFIDT DERVITCEDA AELQLQQPHV
VRLETRPPNL EGQGQVTMTE LVRNCLRMRP ERIIVGEVRG PEAFDLLQAM NTGHDGSMGT
LHANSPREAL SRLESMITMG GYALPSKTIR EMICGSIDVV IQAARLRDGS RRITHITEVL
GTEGDVIITQ DLFVYDIEGE DETGRIIGKH KSTGIARPSF WDRARYYNQH QALAAALDRA
QG