Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0236 |
Symbol | |
ID | 5454703 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 254871 |
End bp | 256319 |
Gene Length | 1449 bp |
Protein Length | 482 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640875799 |
Product | type II secretion system protein E |
Protein accession | YP_001411516 |
Protein GI | 154250692 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.505122 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 67 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTTTGGAA GGCGGACCGA AGGTCAGGCA GCAGCGCCGC GTAAGCCGGC AACAGCGCCC GCGTCTCCCG CGCCGCGGCA GGAGGGGGCT GTTGCCGCTC CTGCAGCGGC TGTGAAGCCA TTGCCGCCGA AGCAGGCGCC AAAACCCGCT GCGCCGGCAC GGAGCGATCA CCGCTCGGAA AATTACTATC AGATCAAAAC GACGATCTTC AACGCGCTGA TCGACACGAT CGATCTCACT CAGCTGGCCC AGCTGGATTC GGAGAGCGCT CGCGAGGAAA TTCGTGACAT CGTCAACGAA ATCCTCTCGA TCAAAAACGT CGTCATGTCC ATCTCCGAGC AGGAAGCGCT CCTGCAGGAC ATTTGCAACG ACGTGCTCGG CTACGGCCCT CTGGAGCCGC TTCTCGCCCG AGATGACATT GCCGATATCA TGGTGAACGG CTGCGAGCGA ACCTTCATCG AAGTGAACGG CAAGGTCGAA CTCACCAATA TTCGTTTCCG CGACAACAGC CAGCTGATGA ACATCTGTCA GCGGATCGTG AGTCAAGTCG GCCGCCGGGT CGATGAATCG AGCCCGATCT GCGACGCACG CTTGCCGGAC GGCAGCCGTG TGAACGTCAT CGTTCCCCCG CTTGCAATCG ACGGTCCCGC CCTCACCATC CGCAAGTTCC GTCGCGACAA ACTGATGATG AACGACCTCG TGCAGTATAA TTCGATATCT CAAGAAGGAG CGGAAGTTCT CGGGATCATC GGAAAGGTCC GCTGCAATGT CTTGATCTCC GGAGGCACAG GCTCCGGCAA GACGACGCTT CTCAACTGTC TTACCGGCTT CATCGATACC GACGAACGCG TCATCACTTG CGAAGACGCG GCGGAACTTC AGCTGCAGCA GCCGCATGTC GTGCGTCTCG AAACCCGGCC GCCAAATCTT GAGGGGCAGG GCCAGGTAAC GATGACGGAG CTCGTGCGCA ACTGCTTGCG CATGCGCCCC GAACGCATCA TCGTGGGCGA GGTTCGCGGG CCGGAGGCGT TCGATCTTCT TCAGGCAATG AATACGGGTC ATGACGGCTC AATGGGCACG TTGCACGCAA ACAGTCCGCG TGAGGCACTG TCTCGTCTGG AGAGCATGAT CACGATGGGT GGCTATGCTC TCCCTTCAAA AACAATTCGT GAAATGATCT GCGGCTCGAT CGACGTTGTC ATTCAGGCCG CGCGCCTGCG CGACGGTTCG CGGCGCATCA CGCATATCAC CGAAGTGCTG GGAACCGAGG GCGACGTCAT CATCACCCAG GATCTTTTCG TTTACGATAT CGAAGGTGAA GACGAGACGG GACGCATTAT CGGGAAGCAC AAATCTACAG GTATCGCGCG TCCGTCCTTC TGGGATCGCG CGCGCTATTA CAACCAGCAC CAAGCCCTGG CAGCCGCGCT CGACCGCGCG CAGGGTTGA
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Protein sequence | MFGRRTEGQA AAPRKPATAP ASPAPRQEGA VAAPAAAVKP LPPKQAPKPA APARSDHRSE NYYQIKTTIF NALIDTIDLT QLAQLDSESA REEIRDIVNE ILSIKNVVMS ISEQEALLQD ICNDVLGYGP LEPLLARDDI ADIMVNGCER TFIEVNGKVE LTNIRFRDNS QLMNICQRIV SQVGRRVDES SPICDARLPD GSRVNVIVPP LAIDGPALTI RKFRRDKLMM NDLVQYNSIS QEGAEVLGII GKVRCNVLIS GGTGSGKTTL LNCLTGFIDT DERVITCEDA AELQLQQPHV VRLETRPPNL EGQGQVTMTE LVRNCLRMRP ERIIVGEVRG PEAFDLLQAM NTGHDGSMGT LHANSPREAL SRLESMITMG GYALPSKTIR EMICGSIDVV IQAARLRDGS RRITHITEVL GTEGDVIITQ DLFVYDIEGE DETGRIIGKH KSTGIARPSF WDRARYYNQH QALAAALDRA QG
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