| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0235 |
|---|
| Symbol | |
|---|
| ID | 5454512 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 253542 |
|---|
| End bp | 254855 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640875798 |
|---|
| Product | response regulator receiver protein |
|---|
| Protein accession | YP_001411515 |
|---|
| Protein GI | 154250691 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4963] Flp pilus assembly protein, ATPase CpaE |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.695166 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 64 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAACC TGGCACACAA GCAGACTTCG GTGGAAGCGC CGCCGATGCC TGAACGTCAA
GCAGCTCCAC AGTCCTTTCC TGTGCCCGTG CAGGAGGCCG ATGGTCTCGC CGTCATGAAG
CCCGTGCCGA GGATCACGAT TCACGCCTTC TGCGAGCAGC CGTCCACCGG CAGCGCGATC
CAGCGCGCGG GCGAAGACCG CCGTCTCGCA AAGGCTCATC TGACCGTTCA TATGGGAGGC
ATTCCTGCTG CGATAGAGCA GTATCAGCAG AACGCGACAC CAAATCTCAT TCTGGTCGAG
GCGCGTGTTG CGGGTCAGGA GCTTTTCTCG CAGCTCACAG CACTTGCCGA AGTCTGCGAT
GCCGGCACAA AGGTCGTCGT AGCCGGGCAC ATGAACGACG TCTCCCTCTA CCGGGAGATG
ATACGCCAGG GTGTCAACGA GTACCTCGTA ACGCCACTTC ACCCGATGGG CGTTATCGAA
GCCATATCTC GTCTTTATGT CGATCCCGAT GCTCCGCCGA TCGGTCGCAC CATCGCTTTC
ATTGGCGCCA AGGGCGGAAC GGGGTCGAGC ACGATCGCGC ATAATGTCGG CTGGTGCATC
TCGACCGGAA TGGACGAGGA CGTCATCATC ACCGATCTCG ACCTTCCGTT TGGCACCGCA
GGGCTCGATT TTAATCAGGA TCCAGCTCAG GGCATCGCAG ATGCGCTGAC AGCACCGGAA
CGGCTGGATG ACGTCCTGCT CGATCGGCTT CTCGTAAAAT GCACAGAACG GCTCAGTCTC
TTCGCGGCTC CGGCCGTCCT CGATCGCGAT TTCGAAATGG ATGGGGACAG CTGTGAAAGT
GTTCTCGACA TCGTCCGTGA AGGAGTGCCT TGCGTCGTTG TCGACCTGCC CCATGTCTGG
GCGCCATGGA CAAAAAAAGT CCTGCTTTCG GCGGATGAGA TCGTCATCAC GGCCACCCCC
GACCTCGCCA GCCTGCGCAA CGCCAAGAAT ATCCTGGATC TCGTGCGCCA GGCCCGTCCG
AACGACAGCG CGCCGCATAT CGTTTTGAAT CAGGTTGGCA TGCCGAAGCG GCCGGAAATT
CCGGTCAAGG ATTTCGCCGA AGCCGTCGGC GCCGAGGCAA CGCTCGTTCT GCCTTTCAAT
CCCGGTCTTT TCGGCACTGC CGCCAATAAT GGGCAGATGA TCGAGGAGTT GGATCCGAAG
GGAAAGACGA CGGACGGATT GCGCTTTCTG GCCCAGCAGC TCTGCGGTCG TGATCTGCGC
GCGCCGAAGG CAGCTAAGTC ATCCCTTTTC AGTTTCCTGT CCCGCAAGGG ATAA
|
|---|
| Protein sequence | MSNLAHKQTS VEAPPMPERQ AAPQSFPVPV QEADGLAVMK PVPRITIHAF CEQPSTGSAI
QRAGEDRRLA KAHLTVHMGG IPAAIEQYQQ NATPNLILVE ARVAGQELFS QLTALAEVCD
AGTKVVVAGH MNDVSLYREM IRQGVNEYLV TPLHPMGVIE AISRLYVDPD APPIGRTIAF
IGAKGGTGSS TIAHNVGWCI STGMDEDVII TDLDLPFGTA GLDFNQDPAQ GIADALTAPE
RLDDVLLDRL LVKCTERLSL FAAPAVLDRD FEMDGDSCES VLDIVREGVP CVVVDLPHVW
APWTKKVLLS ADEIVITATP DLASLRNAKN ILDLVRQARP NDSAPHIVLN QVGMPKRPEI
PVKDFAEAVG AEATLVLPFN PGLFGTAANN GQMIEELDPK GKTTDGLRFL AQQLCGRDLR
APKAAKSSLF SFLSRKG
|
|---|
| |