Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0192 |
Symbol | |
ID | 5455025 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 216945 |
End bp | 218492 |
Gene Length | 1548 bp |
Protein Length | 515 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640875753 |
Product | RNA polymerase, sigma 54 subunit, RpoN |
Protein accession | YP_001411472 |
Protein GI | 154250648 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 56 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCACTAG CACCGAGACT CGAGATGCGC CAGGGGCAGT CCCTGGTCAT GACGCCCCAG CTGCAGCAGG CGATCAAGCT GCTGCAACTG TCCAATCTCG AACTTGCCGA CTATGTCGAA CAGGAACTAG AGCGTAATCC GCTGCTCGAA GCGACGACCT CCGATCCTTC CGACCGGACG GGCGAAGAAC GCGCCGCGCC TGAAACGGAT CGCGAAACCG TCACCACGTC CGAGACATCG CTTTCGCTCA CCGATGACGG GCCGCTGCCT GGCCGCGACG GCGACATCGA CACCGATTAC GACAATGTCT ATGCGGATGA ATCCCGCGCC GACATGCAGA ACGATGCAGC GGCGGCGGCC GCCGACGCGC CGGGACCGAC GGGCTCCGAC TGGCAGAACA TGAAGGGCGG CGGCGGCAAT ACCGGCGACG GCGATTACGA CTTCGCTGCC ACGCTGACGC GCGAGGCAAC GCTTGCCGAA CATCTGACCG AACAGATGAA CACCGCGCTC AAGACCGCGG GCGACCGTCT CATCGGCGCC TATCTCATCG ACCAGGTGAA CGAGACCGGC TACATGACCG CCGATCTCGC GGAGGTCGCC GAACGTCTCG GAACCGATGT CGAGGATGTG GAGGCGGTGC TGCAGGTTCT GCAGACATTC GAGCCGACCG GCATCTGCGC GCGCAACCTC AAGGAATGTC TCGCACTGCA GCTCGCGGAG CGCAATCGCC TCGATCCGGC GATGCAGGCC TTTCTCGACA ATCTCGAACT CTTCGCGAAG CGCGATTTCG ACACGCTGAT GAAGCTCACC GGCGCCGACC GCGAGGATAT CGCGAGCATG GTGGAGGACA TCCGCACCTG CAATCCGAAG CCCGGCCTCG CCTTTGGCGG AGAGCCTGTC GTGCCGGTGA TACCGGACGT CTTCGTGCGT TCGCGCGCCG ATGGAAGCTG GATGGTGGAA GTCAATTCCG AGACGCTGCC GCGCGTGCTC GTGAACCAGC AATATTATTC GGAAGTGTCG AAGCTTTCGG GCGATCCGAG CGCCAAGGCC TATCTCTCCG AGTGCCTCAA CAATGCGAAC TGGCTGGTCA AAAGCCTCGA TCAGCGCGCG CGGACGATCC TCAAGGTCGC GTCCGAAATC GTGCGCCAGC AGGATGCGTT CCTCGTTCAC GGCATTCAGC ATCTGAAGCC CTTGAACCTG AAGACCATCG CCGAGGCGAT CTCGATGCAT GAATCGACGG TCTCCCGCGT CACCGCCAAT AAATACATCG CGACGCCGCG CGGGATTTTC GAGATGAAGT ATTTCTTCAC CTCCTCCATC GCCTCCTCAT CGGGCGGCGC GGCGCATTCG GCGGAAGCCG TGCGTCACCG GATCAAGGAA CTGATCGATG TCGAGCGCCC GGATGCGGTG CTGTCGGACG ACAATCTCGT CGATATCCTG AAGGGCCAGG GTGTCGATAT TGCGCGGCGC ACCGTCGCCA AGTATCGGGA AGCACTCAAC ATTCCCTCTT CCGTGCAGCG CAGGCGCGAA AAAAAGGCCT ATGCGTGA
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Protein sequence | MALAPRLEMR QGQSLVMTPQ LQQAIKLLQL SNLELADYVE QELERNPLLE ATTSDPSDRT GEERAAPETD RETVTTSETS LSLTDDGPLP GRDGDIDTDY DNVYADESRA DMQNDAAAAA ADAPGPTGSD WQNMKGGGGN TGDGDYDFAA TLTREATLAE HLTEQMNTAL KTAGDRLIGA YLIDQVNETG YMTADLAEVA ERLGTDVEDV EAVLQVLQTF EPTGICARNL KECLALQLAE RNRLDPAMQA FLDNLELFAK RDFDTLMKLT GADREDIASM VEDIRTCNPK PGLAFGGEPV VPVIPDVFVR SRADGSWMVE VNSETLPRVL VNQQYYSEVS KLSGDPSAKA YLSECLNNAN WLVKSLDQRA RTILKVASEI VRQQDAFLVH GIQHLKPLNL KTIAEAISMH ESTVSRVTAN KYIATPRGIF EMKYFFTSSI ASSSGGAAHS AEAVRHRIKE LIDVERPDAV LSDDNLVDIL KGQGVDIARR TVAKYREALN IPSSVQRRRE KKAYA
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