Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0185 |
Symbol | |
ID | 5455331 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 211043 |
End bp | 213229 |
Gene Length | 2187 bp |
Protein Length | 728 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640875746 |
Product | TonB-dependent hemoglobin/transferrin/lactoferrin family receptor |
Protein accession | YP_001411465 |
Protein GI | 154250641 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor [TIGR01785] TonB-dependent heme/hemoglobin receptor family protein [TIGR01786] TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 0.0848528 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAACGA TCAATACACG ACGACTCCCC CTTCTATCTC TCCTCTTCGC AACCACCTCC CTCGCCGCGA TCTCCGTGGC GCAGGCTCAG GACACCACCG GCACAGACAC CGGGGAAGAC GCGCCCAAGG CGACGCAGCT CGACGCCGTC ACCTCCACCG CGACGCGCAA TCCGACCGCG ATCAACGATG TCGCAGGCAC CGTCTCCGTC ATCACGGCGG AAGAGCTTGA GCGCCGCAAC GCGAATTCGA TGCAGGACAT CGTGCGCTAC GAGCCGGGCG TCTCGGTCAG CAATTCGCCG ACCCGCGTCG GCGCCGGCAA CTTCACCATT CGCGGCATCG GCGGCAATCG CGTGCTGGTG CTGGTCGATG GCTTCACTGC GCCCGATTAC ATCGACGCTT CCGCGGGCGG CCTCTATACG CGCGACTTCT TCGATCTCGA CAGCATGAAG CGCGTCGAAA TCATTCGCGG CCCGGCCTCC GCGCTTTACG GTTCCGATGG TCTCGGCGGC GTCGTCTCCT ATGTGACGAA AGACCCGTCC GACTATCTCG ATATTTTCGA CAAGGATTGG TATGCGAGCC TCAAGAGCGG CTATGACAGC TCCGATGAGA GCTTCACGGA ATCGGCAACC GGCGCCGTCC GCGCGGGCAA TGTCGAAATG CTCGGCCTCT ATACGCGCCG CGACGGCCAC GAGGTCGAAC CGAACAGCAG CTATGTCGCC AATCCGATCG ACTATGAGTC GAACTCGTTC CTCGCCAAGC TCGTCTTCAA CGGGCCGGAC AGCAACAAGC TCACCTTCAC CGGCCAGCTC GACAACAAGC AGGCCGATAT CCGCCTCTTG AGCGAAGAAA CCGGCACCGT CAATCGTTCC GAAGCGACCG ACGAGACCGA CCGCTACTTC GTCAGCGCCG CCTACTCCCA CCGGATGCCG ACGCCGATCG CGGACCGCAT GGAACTCAAG ATCGGCTACA CCAAGCTCGA CCGCGTCGAG CATACCGAAC AGCTCCGCAG CGGCAGCACG GTTCTCCGCC TCTCCGATCT TCACTTCAAT CAGGAGATTC TCAGCGGCGA CTTCCAGTTC GGCCTGACGC GCGAATGGGC GGGCTTCACG CATGATTTCA CCTATGGCGT GACCGCCGAC TACACGGAAA CCTCGCGCCC CCGCTACCGG ACCGAGACCA ACCTCATCAC CAACACGACC ACCAATGTCG TCGGCTTCGA GACATTCCCG AACAAGAACT TCCCGGATAC CGAGACGATC AAGGCGGGCG TCTATGTGCA GGACGATATC GGCATCGGCC GGTTGAACAT CATTCCGGCG CTCCGCTTCG ACTATTATTC GCTCGATACG AAGATCGACC GGATGTTCCT CAACTCGGCG GGCACCAACG TGCCGGTCGA CATGACGGAG ACGGAAATCT CTCCGAAGCT CGGCCTGACA TTCGCGCTTA CCGAGGAATA CAAGATCTTC GCGCAATACG CGCATGGCTT CCGCGCGCCG CCCTATGACA GCGCAAACTA TGCCTGGCAG CACACGACCT TCGGTTATGA AATCATTCCG AACCCGAACC TGAAGCCGGA AACGAGCGAC GGCTTCGAGG CGGGCCTGCG CGGCAAGTTC CGCGACGGAT CGAGCTTCTC GGTCGCAGGC TTCTACAACA CCTATGAAGA CTTCATCGAC CAGGTCCTCC TCGGCGTGGG CGGCGTGCCG CCGCTGATGC AGTTCCAGTA TCAGAACCTC GCCGAAGTCA CGATCTACGG CGCCGAAGCC AAGGGCGAAT ACCGCTTCCT GCCGGAATGG GCGCTTATCG GCAGCCTCGC CTATGCGCGC GGCGAGGACG ACCAGACCGG CGACCCGATC GACTCGGTCG ACCCGCTCAA GGGCGTTCTC GGTCTCGCCT ATGAAGGCGA CAGCTGGGGC TCGCAACTCG TCGCCACCCA TGCCTGGCGC GACACGCGCA ACGCAACGCC CGGCAATTTC GAGGCGCCGT CCTACACGCT GGTCGACCTC ATGGCCTATT ACGACATGTC GGAACACCTG ACCGTGAATG CCGGCATCTT CAACATCTTC GACGAGGAAT ATTACTTCGC CCAGGATGTC GCCGGCCTTG CCTCCGGCAG CCCGCTCACC GGGCGCTATG CGCAGCCCGG CCGCAATTTC GGCATCAACG CAACCGTTCG CTTCTGA
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Protein sequence | MATINTRRLP LLSLLFATTS LAAISVAQAQ DTTGTDTGED APKATQLDAV TSTATRNPTA INDVAGTVSV ITAEELERRN ANSMQDIVRY EPGVSVSNSP TRVGAGNFTI RGIGGNRVLV LVDGFTAPDY IDASAGGLYT RDFFDLDSMK RVEIIRGPAS ALYGSDGLGG VVSYVTKDPS DYLDIFDKDW YASLKSGYDS SDESFTESAT GAVRAGNVEM LGLYTRRDGH EVEPNSSYVA NPIDYESNSF LAKLVFNGPD SNKLTFTGQL DNKQADIRLL SEETGTVNRS EATDETDRYF VSAAYSHRMP TPIADRMELK IGYTKLDRVE HTEQLRSGST VLRLSDLHFN QEILSGDFQF GLTREWAGFT HDFTYGVTAD YTETSRPRYR TETNLITNTT TNVVGFETFP NKNFPDTETI KAGVYVQDDI GIGRLNIIPA LRFDYYSLDT KIDRMFLNSA GTNVPVDMTE TEISPKLGLT FALTEEYKIF AQYAHGFRAP PYDSANYAWQ HTTFGYEIIP NPNLKPETSD GFEAGLRGKF RDGSSFSVAG FYNTYEDFID QVLLGVGGVP PLMQFQYQNL AEVTIYGAEA KGEYRFLPEW ALIGSLAYAR GEDDQTGDPI DSVDPLKGVL GLAYEGDSWG SQLVATHAWR DTRNATPGNF EAPSYTLVDL MAYYDMSEHL TVNAGIFNIF DEEYYFAQDV AGLASGSPLT GRYAQPGRNF GINATVRF
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