| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0182 |
|---|
| Symbol | |
|---|
| ID | 5453632 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 208263 |
|---|
| End bp | 209153 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640875743 |
|---|
| Product | periplasmic binding protein |
|---|
| Protein accession | YP_001411462 |
|---|
| Protein GI | 154250638 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4558] ABC-type hemin transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 0.0861033 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGTC TTGCCGCCAT TCTCGCCGCC GCAACAATCA CAGCGGCGGC GGTCGCCGCC
CATGCCGCCA CGCCCGCGCG CGTTGTCAGC GTCGGCGGCT CGACCACCGA GATCGTCTAT
GCGCTCGGTG CGGGCGAGAG CCTTGTCGGC GTCGACACGA CGAGCCTCTA TCCGTCAGCG
GCGACCGAAC TGCCGAATAT CGGCTATGTC CGTCAGCTTT CGGCGGAAGG TCTTCTCTCG
CTGAAACCCG ACCTGCTGCT CACCGGCTCC GAAGCCGGTC CGCCCGCCGC GCTCCAGCAG
GCGGAGGCGA TCGGCGTTCC CATCGTGAAG ATGAGCGAAG GCTACACGCC TGAAGCCGTC
GAACGGCATA TCGAGACCGT CGGCAAGGCG CTTGGCCGCG AACAGGAGGC CGCCGAATTG
CGTGCGGCCT TCGCGGAAGA CATCGCCGCC GTCAATGCGG AGATCGCGAA GACGACTTCC
AAACCCCGCG TGCTCTTCGT CCTCCAGACG AGCCGGGGCG CCATGCTCGT TTCCGGCACC
GATACGGCGG CAAGCGCGAT GATCGAGCTT GCGGGCGGCG TCAACGCCGT CACCGAGTTC
AGCGGTTACA AGCCCTTCTC GCCGGAAGCC GCAACGCTCG CGGCGCCGGA CGTCATCCTG
ATGTCCGACC AGACGGTCGA GACGCTGGGC GGTACAGAGA TCATCCTCGC CGAACCGGCC
TTCCAGGCCA CGCCCGCCGG ACAAAATGGC CGCGTCGTGA TGATGGATGC GCTCTATCTC
GCAGGCTTCG GTCCACGCCT CGCCCATGCG CTGCATGATC TCGCGGCGGC GCTTCATCCC
GAACATGAGT TCGCACCGCT CCCGGCGCGT CCCTGGACAG AGGCGCAATG A
|
|---|
| Protein sequence | MKRLAAILAA ATITAAAVAA HAATPARVVS VGGSTTEIVY ALGAGESLVG VDTTSLYPSA
ATELPNIGYV RQLSAEGLLS LKPDLLLTGS EAGPPAALQQ AEAIGVPIVK MSEGYTPEAV
ERHIETVGKA LGREQEAAEL RAAFAEDIAA VNAEIAKTTS KPRVLFVLQT SRGAMLVSGT
DTAASAMIEL AGGVNAVTEF SGYKPFSPEA ATLAAPDVIL MSDQTVETLG GTEIILAEPA
FQATPAGQNG RVVMMDALYL AGFGPRLAHA LHDLAAALHP EHEFAPLPAR PWTEAQ
|
|---|
| |