Gene Plav_0154 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_0154 
Symbol 
ID5455243 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp169440 
End bp171002 
Gene Length1563 bp 
Protein Length520 aa 
Translation table11 
GC content66% 
IMG OID640875715 
ProductAMP-dependent synthetase and ligase 
Protein accessionYP_001411434 
Protein GI154250610 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones70 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTATCTCA CGCAATCCAT TCACCGCGCC GTGGCGGTGA CGTCGCGCGC CGCCGCCACG 
ATCTGCGGCA CCCGGACCCG CACATGGACG GAGCTGCATG ACCGTGTCTC GCGTCTCGCG
GGCGCCCTGC GCGGCCTCGG TGTGGGCGCG GGCGACCGCA TCGCCCTCCT CTCCATGAAT
TCGGACCGCT ATCTCGAAAC CTGTTTCGCG GCCTGGTGGG CGGATGCCGT CATCGTGCCC
ATGAACACGC GCTGGTCGGT CGCCGAGCAT GTCTATTCGA TCGAGGACGC CGGCGCGGCG
CTGCTGCTCA TGGACGAGAC TTTCCGCGAA GCCGGGCTCG CCGTGCGCGA CGCCTGCCCG
CGGATCGCTC ATGCCGTCTA CATGGGGGAT GGCGCGGCCC CGGAGACCTG CCTTTCATAT
GAAGAGCTGA TCGCCGCCGG TCCCGCAATC GGAGATGCGC GGCGCGGCGG CGAGGAGCTC
GCAGGCATCT TCTACACGGG CGGCACGACA GGTTTCCCGA AAGGCGTCAT GCTCTCCCAC
AAGGCGCTCT GGACAAGTTC GCTGTCGGTC GGCGCGGGCA CGGCGGGGTT CAATCCCGAT
ATGCGCTATC TCCACGCGGC GCCGATGTTT CATCTCGCCG ACTTCGCCAT GTCCACCGCC
ACCACGATCT ATGGCGGCTC GCATGTCTTC ATGCCCTCCT TCGAGCCCGC TTCCTTTCTG
AAACTCATCG AGCAACACCG CGCCAGCTAT GCGCTGCTCG TGCCCACCAT GATCCGCATG
CTGCTCGACT GCCCGGCCAT GGCGCAGCAC GATCTGTCCT CGTGGAAGGG CCTCTTCTAC
GGCGCCTCTC CCATGCCCGA AGCGCTTCTG CGCGAGGCGC TGGCGAAACT TCCCGGTGTC
GCCTTCACGC AAGGCTACGG GCAGACGGAG CTCGCCCCCA TCGCGACATT GCTCGGCCCG
GAATTCCACG TTCTCGAAGG GCCGAACGCG GGCAAGCTCC GCTCCGCCGG GCGTCCCGGT
CTCTGCGTCG AACTGCGCGT CGTCGGCCCG GACGGCAAGG AGCTCCCGCG CGGCGAAGTC
GGCGAGGTCG CGGTGCGCGG TCCGAACACC ATGCTCGGCT ACTGGAACAA GCCGGAACAG
ACCGCCGCGA CGCTTGTCGA CGGCTGGGTG ATGACGGGCG ACGGCGGCTA CATGGACGAG
GAAGGCTTCC TCTACATCGT CGACCGCCTG AAGGACATGA TCGTCTCCGG CGGCGAGAAT
GTCTTCTCGG CCGAAGTCGA GAACGCGGTC ATGCAGCACG ATGCCGTCGC CGAATGTGCC
GTCATCGGCG TGCCGGATCC GAAATGGGGC GAGCGGGTGC ATGCCGTCGT CGTTCCGAAG
TCCGGCCGCC ACCTCTCGGA AGAAGAACTC TTCGCGCACT GCAAGGCGCT CATCGCCGGA
TACAAGTGCC CGCGCAGCGC CGACATCCGG CACGAACCGC TGCCGAAATC CGCGGCCGGA
AAAATTCTGA AAACCGATCT GCGCCGTCCC TATTGGGAAG GGCAGAGCCG AAACGTCAGC
TGA
 
Protein sequence
MYLTQSIHRA VAVTSRAAAT ICGTRTRTWT ELHDRVSRLA GALRGLGVGA GDRIALLSMN 
SDRYLETCFA AWWADAVIVP MNTRWSVAEH VYSIEDAGAA LLLMDETFRE AGLAVRDACP
RIAHAVYMGD GAAPETCLSY EELIAAGPAI GDARRGGEEL AGIFYTGGTT GFPKGVMLSH
KALWTSSLSV GAGTAGFNPD MRYLHAAPMF HLADFAMSTA TTIYGGSHVF MPSFEPASFL
KLIEQHRASY ALLVPTMIRM LLDCPAMAQH DLSSWKGLFY GASPMPEALL REALAKLPGV
AFTQGYGQTE LAPIATLLGP EFHVLEGPNA GKLRSAGRPG LCVELRVVGP DGKELPRGEV
GEVAVRGPNT MLGYWNKPEQ TAATLVDGWV MTGDGGYMDE EGFLYIVDRL KDMIVSGGEN
VFSAEVENAV MQHDAVAECA VIGVPDPKWG ERVHAVVVPK SGRHLSEEEL FAHCKALIAG
YKCPRSADIR HEPLPKSAAG KILKTDLRRP YWEGQSRNVS