| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0149 |
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| Symbol | rpsA |
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| ID | 5455959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 163938 |
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| End bp | 165647 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640875709 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_001411429 |
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| Protein GI | 154250605 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCTAGCA CAGCAAGCGC GCTCAATCCG AGCCGCGAAG ATTTCGCCGC CCTTCTCGAG
CAGTCCTTCA TGGACAGCAA CATGCAGGAA GGCTCCGTCA TTAAAGGGAC GGTTGTCGGC
ATCGAAAACG ATCTTGCGAT CATCGATGTG GGCCTCAAGA CCGAAGGCCG CATCGCTCTC
AAGGAATTCG CAACTCCCGG CAAGCCGGCC GCGCTGAATG TCGGCGACAC GGTCGAGGTC
TATCTCGAAC GCATCGAAAA CGCGATGGGC GAAGCAGTGC TCAGCCGCGA GAAAGCCAAG
CGCGAAGAGA GCTGGGTTCG TCTGGAAGTT GCCTTCGAAA AGCAGGAGCG CGTCGACGGC
CAGATATTTG GTCGCGTCAA AGGCGGCTTC ACCGTCGATC TCGACGGCGC CGTCGCCTTC
CTTCCTGGCA GCCAGGTCGA TATCCGCCCC GTGCGCGATG TGACCCCGCT CATGAACATT
CCGCAGCCCT TCCAGATCCT CAAGATGGAC AAGCGTCGCG GTAATATCGT TGTCTCGCGC
CGCGCCGTTC TCGAAGAAAC CCGCGCCGAA CAGCGCCAGG AACTCGTCGA GAACCTCAAG
GAAGGCCAGG TGCTCGAGGG CGTCGTCAAG AACATCACCG ATTACGGCGC GTTCGTCGAT
CTCGGCGGTG TGGACGGCCT GCTCCACGTG ACGGATATCG CATGGCGCCG CGTAAACCAT
CCGACGGAAG TTCTCTCGAT CGGCCAGACC GTGAAGGTGC AGGTCATCAA GGTGAACCAC
GAGACGCAGC GCATCTCGCT CGGCATGAAG CAGCTCGAAG CCGATCCGTG GGAAGGCGTC
GAGGCGAAGT ATCCGCTTGA GGCGCGTTTC AAGGGTCGCG TCACAAACAT CACCGATTAC
GGCGCGTTTG TGGAACTCGA ACCCGGCGTC GAAGGCCTTG TCCATGTTTC TGAAATGAGC
TGGACGAAGA AGAATGTGCA TCCGGGCAAG ATCGTTTCCA CCTCGCAGGA AGTGGAAGTG
ATGGTGCTGG AAGTCGATCC GGTCAAACGG CGTATTTCGC TTGGCCTCAA GCACTGCATG
GACAATCCGT GGGCAACTTT CGCGGAACGT TTCCCGGTCG GCACTGTCGT CGAAGGCGAG
ATCAAGAACA TCACCGAGTT CGGTCTGTTC ATCGGCCTCG ATGCGGATGT CGACGGCATG
GTGCATATGT CGGATCTCGA CTGGAACAGG GCCGGCGAAG AAGCCATGGC CGATTATCAG
AAGGGCCAGG TCGTCAAGGC TCAGGTTCTT GATGTCGACA CCGAGAAGGA GCGCATCTCG
CTTGGCATCA AGCAGCTCGG CGGCGACCCG ATGGAAAGCC TCGGCGAGCT CCGCAAGGGT
GCCGTCGTGA CCTGCACCGT CACTGGCGTT ACCGACAACG GCCTCGAGGT CTCTGTCGGC
GACGACAACA TGACGGCCTT CATCCGCCGC GCCGAGCTCG CGCGTGACCG TGCAGACCAG
CGCCCCGAGC GTTTCGCCGT GGGCGACAAG GTCGACGCCC GCGTGACTCA GTTCGACCGC
GCCGGACGCA AGATCCAGCT TTCGATCAAG GCGCTGGAAA TTGCGGAAGA GAAGGAAGCC
GTGGCTCAGT ATGGCTCGTC GGATTCAGGC GCGTCGCTTG GCGACATCCT GGGTGCTGCC
CTCAACAAGG CGAGCACCGA CGACAAATAA
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| Protein sequence | MASTASALNP SREDFAALLE QSFMDSNMQE GSVIKGTVVG IENDLAIIDV GLKTEGRIAL
KEFATPGKPA ALNVGDTVEV YLERIENAMG EAVLSREKAK REESWVRLEV AFEKQERVDG
QIFGRVKGGF TVDLDGAVAF LPGSQVDIRP VRDVTPLMNI PQPFQILKMD KRRGNIVVSR
RAVLEETRAE QRQELVENLK EGQVLEGVVK NITDYGAFVD LGGVDGLLHV TDIAWRRVNH
PTEVLSIGQT VKVQVIKVNH ETQRISLGMK QLEADPWEGV EAKYPLEARF KGRVTNITDY
GAFVELEPGV EGLVHVSEMS WTKKNVHPGK IVSTSQEVEV MVLEVDPVKR RISLGLKHCM
DNPWATFAER FPVGTVVEGE IKNITEFGLF IGLDADVDGM VHMSDLDWNR AGEEAMADYQ
KGQVVKAQVL DVDTEKERIS LGIKQLGGDP MESLGELRKG AVVTCTVTGV TDNGLEVSVG
DDNMTAFIRR AELARDRADQ RPERFAVGDK VDARVTQFDR AGRKIQLSIK ALEIAEEKEA
VAQYGSSDSG ASLGDILGAA LNKASTDDK
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