| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0098 |
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| Symbol | |
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| ID | 5453585 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 104851 |
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| End bp | 105786 |
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| Gene Length | 936 bp |
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| Protein Length | 311 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640875657 |
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| Product | CRISPR-associated Cas1 family protein |
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| Protein accession | YP_001411378 |
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| Protein GI | 154250554 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1518] Uncharacterized protein predicted to be involved in DNA repair |
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| TIGRFAM ID | [TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03639] CRISPR-associated endonuclease Cas1, NMENI subtype |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.181677 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 0.510072 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCGTA AAACCGTCGA GTTCGCAACG CCGGGGACGC GCCTTTCCGT TGCCAACAAG
CAGCTGGTAA TCGAGCGACC CGATCTTCCG AAGGCAACGC TGCCGATTGA GGATCTGGGC
GTCGTCATTG TCGACGACTT GAGGGCGACA TATACGCAAG CGGTTTTTAT CGAACTGCTT
GAAGCCGGTG CAACTGTCAT GGTGACAGGG CGGGACCACC TGCCCGCCGG AATGATGCTC
CCGCTTGATG CGCACCATAT ACAAACGGAG CGGCACCGGG CGCAGGTGGA AGCGAGCGAA
CCGACGAAAA AGCGCGCTTG GCAGGCATTG ATCCGAAGCA AGATTGCGCA ACAGGGCATA
GTTCTTGCTC ATTTCACAGG CGAGCATGGC GGCCTTCTTC CAATGGCGCG GCGCGTCCGC
TCCGGCGATC CCGACAATCT GGAGGCGCAA GCCGCACAAC GTTATTGGCC CCGCCTGTTC
GGAAAAGATT TTCGGCGAGA CCGCGATCTG GAAGGCGTCA ATGCCTTGCT GAATTATGGT
TATGCAGTTG TCCGCGCCGC GACGGCACGC GCGACTGTTG CGGCCGGGTT AATTCCGTCA
CTTGGCGTAT TCCATCGAAA CCGCGCGAAT CCGTTTTGCC TTGCCGACGA TCTTCTGGAG
CCTTACCGGC CCTATGTGGA TTGGCGGGTC CGATTGCTTG CCAATCAAAT GGGCGAAGAG
GCGCCAAGCC TCGATGATCG TGACACGCGG GCGGCGCTGC TTTCCATTTT CAATGAGACT
GTTCTTGTTG GGGGCAGGCG AATGCCGCTC TTGCTTGCAC TTCACGCAAG CGCCGCTTCG
CTGTGCCGCG CGTTGACGGG AGGTGAAGCG GCACTGGCAT TGCCCGAAGG CATGCCGCTT
GCGCCCGATC TTCTCGACAA TGATGGAGAG GGATGA
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| Protein sequence | MIRKTVEFAT PGTRLSVANK QLVIERPDLP KATLPIEDLG VVIVDDLRAT YTQAVFIELL
EAGATVMVTG RDHLPAGMML PLDAHHIQTE RHRAQVEASE PTKKRAWQAL IRSKIAQQGI
VLAHFTGEHG GLLPMARRVR SGDPDNLEAQ AAQRYWPRLF GKDFRRDRDL EGVNALLNYG
YAVVRAATAR ATVAAGLIPS LGVFHRNRAN PFCLADDLLE PYRPYVDWRV RLLANQMGEE
APSLDDRDTR AALLSIFNET VLVGGRRMPL LLALHASAAS LCRALTGGEA ALALPEGMPL
APDLLDNDGE G
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