Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0096 |
Symbol | |
ID | 5454616 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 98980 |
End bp | 100665 |
Gene Length | 1686 bp |
Protein Length | 561 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640875655 |
Product | YidE/YbjL duplication |
Protein accession | YP_001411376 |
Protein GI | 154250552 |
COG category | [R] General function prediction only |
COG ID | [COG2985] Predicted permease |
TIGRFAM ID | [TIGR01625] AspT/YidE/YbjL antiporter duplication domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.0519277 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 0.835648 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCTTTCG TCGGTGACAT ATTCCGGCAT TCTCCCGAGA TCGCATTGTT TCTCGCATTG GCCCTGGGCT ACTGGATTGG AAAATTCCAG TTCGGCAAGT TCCAGCTCGG CGGCGTGGCC GGAACGTTGC TGGCCGCTGT GGCGATCAGC CAGTTCGGGG TGCATATCGA CGACGGCATC AAGGCCGTTC TCTTTGCTCT ATTCATCTAT GCCGTCGGCT TCGAGAGCGG CCCTCAGTTC TTCCGTTCTC TCGGCAGACA CTCGATCCGC GAGATCGTCA TGGCGGCGGT TCTGGCGATT AGCGGATTGG CAACGGTGAT CGTGCTCGCC AAGCTCTTCG AGCTGGACAA GGGCATTGCG GCCGGCATCG CCGCTGGCGG TCTCACCCAG TCGGCGATCA TCGGCACTGC CGGCGCGGCG ATCGAGAAAC TTGGCCTTGC CGCGGACGAA GCGCAGCGGC TCCAGGCCAA CGTCGCGATC GGCTATGCCG TGACCTACAT TTTCGGTTCT TTCGGCGCGA TTATCATCTG CGTCAACATT CTTCCCTGGT TCATGGGACG AGGTATTCGC GACGATGCCG TGAAAGCCGA AGCTGAAATG CTGAAGGGCG CGCGCATTTA CGGCGCGGGG GAAGCGCCGG CTTTGCCCGA ACTTTTCGGC CGCGTCTATC GCATCCAGAA GGCGTCAGGC CAAACCGTAT CGGCAATCGA GAGCGCCGCC ACCAACGGCC CCATCACCAT CGAACGCGTC AAGCGCAAGG GAAAGATCAT CGGCATCGAA CCAGATCTCA AGCTGGAGAC GGGCGACTTC GTCCTTGTTG TCGGCCGCCG GTCCGGCATC GTCGGCCTGG ACGACAGGCT AGGCCCGGAA TCGCCGGGGA CGGAAGGCAT GGAACTGGTC ATGACGACAC GCGATATCGT AATCACCGGC AAGAATTTCG TCGGCCGGTC CGTCGGGCAA ATCATTGCCG AAAACAGCAG CCTGCGCCAC GGCATCTATG TGCTGGCCGT GACGCGCGGC GGGACGAAGC TGGACCTGAA GAACGACACC ATGATCCGGG CGGGCGACAT CGTTACTATC CATGGCGTCC AGGAAGACCT GCAACGGCTG GTGGGCGAGG TCGGACCCGC CATCATTCCC AGCGACAAGA CAGATTTCGT CTTCCACGGG CTCGGGCTGG TCGCTGGACT GTTGATCGGC CTGCTGGTCC TGCGCATCGG CTCCACACCG CTTACGCTCG GAGCCGGTGG CGGCGCGCTT CTCGCCGGCC TGATCTTCGG CTGGTACCGC AGCCGGCATA TGACAATGGG CAACATGCCG ACGGCTGCGT CCACCTTGCT GCGTGACCTC GGCCTTGCCG GCTTCGTCGG CGTGGTCGGG CTGCAGTCGG GGCAGCAAGC GGTGCAGACG GTCATGGAAA GCGGGCTTTC GATCTTCCTG ATCGGGGTGG TCGTCACCGT CCTGCCGCTC CTCATCACGA TGATCGTAGG CCGTTATGTT CTGCGTTACG AAAACGTAGC GGTGTTCGCA GGCGCGCTGT CTGGATCGCG GAGCGCCAAT CCAGCATTCG GCGAAATCCT GGACAAGGCC GGCAACTCCG TCCCCACCGC GCCCTTCGCC ATCACCTATG CCCTCGCAAA TGTTTTCCTG ACGCTGCTTG GCCCGCTGGT CGTGGCGTTC GTCTGA
|
Protein sequence | MAFVGDIFRH SPEIALFLAL ALGYWIGKFQ FGKFQLGGVA GTLLAAVAIS QFGVHIDDGI KAVLFALFIY AVGFESGPQF FRSLGRHSIR EIVMAAVLAI SGLATVIVLA KLFELDKGIA AGIAAGGLTQ SAIIGTAGAA IEKLGLAADE AQRLQANVAI GYAVTYIFGS FGAIIICVNI LPWFMGRGIR DDAVKAEAEM LKGARIYGAG EAPALPELFG RVYRIQKASG QTVSAIESAA TNGPITIERV KRKGKIIGIE PDLKLETGDF VLVVGRRSGI VGLDDRLGPE SPGTEGMELV MTTRDIVITG KNFVGRSVGQ IIAENSSLRH GIYVLAVTRG GTKLDLKNDT MIRAGDIVTI HGVQEDLQRL VGEVGPAIIP SDKTDFVFHG LGLVAGLLIG LLVLRIGSTP LTLGAGGGAL LAGLIFGWYR SRHMTMGNMP TAASTLLRDL GLAGFVGVVG LQSGQQAVQT VMESGLSIFL IGVVVTVLPL LITMIVGRYV LRYENVAVFA GALSGSRSAN PAFGEILDKA GNSVPTAPFA ITYALANVFL TLLGPLVVAF V
|
| |