Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0045 |
Symbol | |
ID | 5455890 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 47696 |
End bp | 49030 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640875604 |
Product | major facilitator transporter |
Protein accession | YP_001411325 |
Protein GI | 154250501 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.0327786 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 59 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGACC GTGTGGACGC CGCGGGCGGC GCCGCCACCG GCGTTGCGCC GTCGGCAGGC TTCACGCCCG CCTACCGGAA CTATGCCCTC TTTATACTGA TGGTCGCCTA CACGGCGAAT TACGTCGACA GGCAGATCCT CGCGATCCTG CTGGAGCCGA TCAAGCAGGA TCTCGGCCTC AACGACACGC AGCTCGGTTT CCTCTCCGGC ATCACCTTCG CGATTTTCTA CGCAACGCTC GGCGTTCCGA TCGCCATGTG GGCGGACCGC ACGAACCGGC GCAATATCGT GGCGCTCGCG CTCACCATCT TCTCCAGCAT GACGGTGGTC TGCGGCTTCG TCACCAACTT CGCGCAGCTC GCGCTGGCGC GTATCGGCGT CGGCATCGGC GAGGCCGGGT CGAGCCCGCC TTCCCATTCC ATGATCTCCG ACATGTTCCC GCCGGAAAAG CGCGCAAGCG CCATGGGCAT TTATTCGCTC GGCATCAATA TCGGCATTCT CATCGGCTTC CTCGTCGGCG GCTGGGTCAG CCAGTGGTAT GGCTGGCGCG CGGCCTTCTT CATTGTCGGC GCGCCGGGCC TCCTCATCGC GCTCCTCGTC CGCTTCACCT TGAAGGAGCC TGAGCGCGGC CATGCGGATG GCATCGCCTC GCAGGCATCG GCCGCCGCGC CCAAGGTCAT GGAAGTCTGG AAGCTGCTCT GGTCGCAGCG TTCCTTCCGG CACATTTCCA TTGGCTGCGC GCTCGCCGCC TTCGGCGGCT ATGCGGGCGT CACCTGGATA CCTGCCTTCC TGATGCGCTC CTTCCAGATG TCGCCGGGCG AAATCGGCAC CTGGCTCGCG CTCATCATCG GCTTTGTCGG CGGTGCGGGC ACCTATCTCA CAAGCTGGCT TGCCGATCGT TATGGCAAGG GCGATGTGCG CTGGAACATG TGGGTGGTCG CCATCGTCAT GCTGGTCTGC TTCCCCTTCG CGGTCGGCAT GTATCTGTCG ATGGACAAAT ACTGGGCACT GGCCTTCTTC CTTGTGCCGG CCTTCGCGGG CGCGGCCTAT ATCGGGCCGA GCCTCGCCAT GACGCAGGGC CTCGTCACCC TGCGCATGCG GGCCGTCGCC TCGGCGGTGC TGTTCCTGAT CCTGAACCTC ATCGGCATGG GCCTCGGGCC GCAGGCCGTG GGCATCGTCA GCGATCTCTA CAATCCGCTC TACGGCGCGG AATCGCTCCG CTACGCGCTC CTCACCGTCA TGGTGGTCTG GCCCTGGGCA GCGGTGCATT TCGTGCTGGC GGCAAAAACG CTGAAGGAAG ACCTCGCCCG CGCCAAGGCG CATAGCCTGA GATAG
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Protein sequence | MTDRVDAAGG AATGVAPSAG FTPAYRNYAL FILMVAYTAN YVDRQILAIL LEPIKQDLGL NDTQLGFLSG ITFAIFYATL GVPIAMWADR TNRRNIVALA LTIFSSMTVV CGFVTNFAQL ALARIGVGIG EAGSSPPSHS MISDMFPPEK RASAMGIYSL GINIGILIGF LVGGWVSQWY GWRAAFFIVG APGLLIALLV RFTLKEPERG HADGIASQAS AAAPKVMEVW KLLWSQRSFR HISIGCALAA FGGYAGVTWI PAFLMRSFQM SPGEIGTWLA LIIGFVGGAG TYLTSWLADR YGKGDVRWNM WVVAIVMLVC FPFAVGMYLS MDKYWALAFF LVPAFAGAAY IGPSLAMTQG LVTLRMRAVA SAVLFLILNL IGMGLGPQAV GIVSDLYNPL YGAESLRYAL LTVMVVWPWA AVHFVLAAKT LKEDLARAKA HSLR
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