| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0026 |
|---|
| Symbol | |
|---|
| ID | 5456287 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 28472 |
|---|
| End bp | 29842 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640875585 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001411306 |
|---|
| Protein GI | 154250482 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 0.230095 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCCTC TCCAGCGGGT GGAAACAAAA AGGGCGGCTT CCGAAGAAGC CGCCCAGTTT
GTTCGAGGGG ATCGAGTTGA GGGAACTCTA CTCCGTCTAC GCTTTACGCA ACTTGTCGTC
CGGCGCTTAT TCCGCGGCGG AGACGCTTAC ATTCTTCAGC GCATCGGCAT TGGTGCCGAA
ATTGATCTGC TGCAGATAGC GGATGCCGTC CTCGGCGATA TCGTCGCCGA CCATGCGGTC
GCCTTCATGG CGCAGCTCTT CCATGTCCAC ATAGGTGGCG TAGAAGGCCT TGGTGCGGTC
GGTGATGATG CCGGCCTTGA GCAGCGTCTT GATGAGCACG CGGAAGATGT TGGTGCCTTC
CTTCATGCTC TCGCGGCGGT CTTCATCGCC GAAGGCTTCG AGCATCTCGA GCTGCACCTG
CTGCCATTCG AGACCGAACT CGCCGTAGAT CGCCTGCTTC TGCTCGGGGT TCACGAGGTT
GAACAGCAGG GTCTGGAAGC ACTCGGCCGC CCAGTCCTCG ATGATGTTCT GCTCTTCTTC
CGAGAGGTTC GGGATCGTGC GGTCGGCCCA GATCTTGCCG AACTTGTGAT GGAAGGCTTC
GTCCGTCATC ACGAGCTGCG TCAGCTTGAC GAGGAGCGGA TCGTTCGACT TCGCGTAAAG
CGTCGCGAAG GCGCCCATGG CAAGGCCTTC GACCAGCATC TGCATGCCGA CGATCTTCTT
GTAGACCTCC GGTGCGTTGA CGATGTTGGT GAGCAGGCCG CCCAGCGTCG GGCCGACGGC
GAGGGGCTTG CCCCAACGCG CCTGGATGTA TTTCGCGAAG GCCGTCACAT GGCGGGCTTC
TTCGCGGGTC TGGTTGGCGG CATATTCCTG CGCGCCCGGA TCCTTCAGGA TGTGGCAGAG
CGAGGCGGAA AGCGCCAGCG CGCCGGCTTC GCCATGCAGG ATCGACGAGA GCATCCAGCG
CGCGCTCTCA TTCGCGAATT TCACGCGCTG CTTTTCCGTC AGCTTCTCGA AGCAGGGCAG
GCGCAGCTCC GGCATCAACT CGCCCGGCAT CACCATCTGG TTTTCGAGAT CGAAGGGTTC
GGCGAAGTCG ATGTACTTCT CGTCCAGCGG ATCCCAGAAA TGGTCGTGGG TCGCGGAAAT
GATCTTGTCG AAGGCGGTGG AGCGGGCGCC GTAACGTTCC GGCTGCATCA TCGCCGGGAA
ATCATGGGGG GCGACGGCAT CATAGGCGTC GTCTTTGGTG ATCTGCCGAA TTTCGGTCAT
CAAGGGTTCT CCAGAGGGTC AGCCGGGACG AGGGGTCGCC GGGAACGCGG GAAGCCGGAC
TTCGAAGGCG AGCGCCCCCC TGCCGGTCTG TTCTGTTTCA GGAAAGAATA G
|
|---|
| Protein sequence | MRPLQRVETK RAASEEAAQF VRGDRVEGTL LRLRFTQLVV RRLFRGGDAY ILQRIGIGAE
IDLLQIADAV LGDIVADHAV AFMAQLFHVH IGGVEGLGAV GDDAGLEQRL DEHAEDVGAF
LHALAAVFIA EGFEHLELHL LPFETELAVD RLLLLGVHEV EQQGLEALGR PVLDDVLLFF
REVRDRAVGP DLAELVMEGF VRHHELRQLD EERIVRLRVK RREGAHGKAF DQHLHADDLL
VDLRCVDDVG EQAAQRRADG EGLAPTRLDV FREGRHMAGF FAGLVGGIFL RARILQDVAE
RGGKRQRAGF AMQDRREHPA RALIREFHAL LFRQLLEAGQ AQLRHQLARH HHLVFEIEGF
GEVDVLLVQR IPEMVVGRGN DLVEGGGAGA VTFRLHHRRE IMGGDGIIGV VFGDLPNFGH
QGFSRGSAGT RGRRERGKPD FEGERPPAGL FCFRKE
|
|---|
| |