Gene Plav_0018 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_0018 
Symbol 
ID5456310 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp21475 
End bp22101 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content66% 
IMG OID640875577 
Producttwo component Fis family transcriptional regulator 
Protein accessionYP_001411298 
Protein GI154250474 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG4567] Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value0.594546 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value0.0172011 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGCCAT CCGGCCTAGA ATCCGGCCAA TTCCGACAGA GATTGGACGA CCAAGTGACA 
GATTCTGCCG AGGCGCCCGA GGGCGAGACC CCCACCATTC CCGAAGACCG CACCTTGCTG
CTGGTCGATG ACGACATCCC CTTTCTGACG CGGCTTGCCC GGGCGATGGA AGGCCGCGGC
TTCGAGGTGA CGACCGCCAG CACAGTGAAG GACGGCAAGG AGCTTGCCCG CTCGAAAAAG
CCGGGCTTCG CGGTTGTCGA CATGCGGCTC GAAGACGGCA ACGGGCTCGA CGTGGTGGCG
ACGCTGGAAG AGGTGCGGCC CGATGCGCGC ATCGTCGTGC TGACCGGCTA CGGCAATATC
GCGACGGCGG TGACGGCGGT GAAGCTCGGC GCGGTCGACT ATCTCGCGAA GCCGTCGGAC
GCCGACCAGA TCGAGGCGGC GCTGCTGGCC ACCGGCGGCG ACAAGGCCGA CCCGCCTGAA
AACCCGATGT CGGCGGACCG TGTGCGCTGG GAACACATCC AGCGCGTCTA CGAGCTTTGC
GACCGCAACG TCTCGGAAAC CGCCCGCCGC CTCAACATGC ACCGCCGCAC TCTGCAGCGG
ATACTGGCGA AACGCGCGCC GAAATAG
 
Protein sequence
MEPSGLESGQ FRQRLDDQVT DSAEAPEGET PTIPEDRTLL LVDDDIPFLT RLARAMEGRG 
FEVTTASTVK DGKELARSKK PGFAVVDMRL EDGNGLDVVA TLEEVRPDAR IVVLTGYGNI
ATAVTAVKLG AVDYLAKPSD ADQIEAALLA TGGDKADPPE NPMSADRVRW EHIQRVYELC
DRNVSETARR LNMHRRTLQR ILAKRAPK