Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0012 |
Symbol | |
ID | 5456184 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 13995 |
End bp | 15233 |
Gene Length | 1239 bp |
Protein Length | 412 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640875571 |
Product | polyhydroxyalkanoate depolymerase, intracellular |
Protein accession | YP_001411292 |
Protein GI | 154250468 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG4553] Poly-beta-hydroxyalkanoate depolymerase |
TIGRFAM ID | [TIGR01849] polyhydroxyalkanoate depolymerase, intracellular |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 0.814207 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.000215226 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGCTCTATC ACATCTACGA ATTGAACCAT GCGGCGGTGG CGCCTTTCCG GGCAGCGGCC GAGGTTGGCC TGTGGGCGCT GCGGCATCCG CTCAACCCCT TCGCGGAGAC GCTGCCGAGC AAGACGCTGG CGGCGGCCTT CGATGTTTTC GAGACGACGA CGCGGCGTTA CGGCAAACCG GAATTCGGAC TTCACGAGAC GACCATCGAC GGCAAGCCGG TTCCGATCAC CGAACGGATC GTGTGGGAGC GGCCTTTCTG CAAGGTGATC CATTTCGAAC GCGAGCCATC GGCGATGAAG GGCGTGGCGC CGCAGCAGAA GCTTTTGATC GTCGCGCCGC TTTCCGGCCA TTACGCGACG CTGCTGCGCG GCACGGTGGA AGCGATGCTT CCCTATCACG AGGTCTACAT CACCGATTGG GTGGACGCGC GGAAAGTGCC TTTGACGGAA GGCTCTTTCG ATCTCGACGA CTATATCGAC TATGTGATCG AGATGTGCCA CGCACTGGGG CCGGACCTGC ATCTGCTCGC CGTCTGCCAG CCCTCGGTGC CGGTCTTCGC GGCTGTCGCC GTGATGCATG ACAATGACGA CGCCTATGTG CCGCTCAGCA TGACGCTGAT GGGCGGACCC ATCGACACGC GCGAAAGCCC GACCGAGGTG AACAATCTCG CCACCGAGCG CGGCACCGAA TGGTATGAAC GCCACGTCAT CACCACCGTT CCCTGGCCGC ATCCGGGCGT GATGCGCCGC GTCTATCCGG GCTTCGTGCA GCTTTCGGGC TTCATGGCGA TGAACCTCGA CCGCCACATG GACGCGCATT GGAACTATTT CGACCACATG GTCGAGGGCG ATGGCGACTC GGCGGAGAAG CATCGCGAGT TCTATGACGA ATATCTCTCG GTCATGGACA TGACCTCGGA GTTCTATCTC CAGACGGTCG ACGAGGTGTT CGTGAAACAC TCGCTGCCCA AGGGCGAGTT CACCCATCGC GGCAAGACGG TGCGGCCCGA CGCCATTACC AGAACGGCGC TGATGACTGT CGAGGGCGAG AAGGACGACA TCTCGGGCGT CGGCCAGACG AAGGCGGCGC ACAAGCTTTG CAAGAACCTA CCGGCCAGCA TGAAGGCCCA TTGGGAGCAG CCGGGCGTCG GACATTACGG CGTCTTCAAC GGCACGAGAT GGAAGAGCGA GATTGCGCCG CGCGTACGCG AATTCATGGC CGCCCACGCC AAGAGGTAG
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Protein sequence | MLYHIYELNH AAVAPFRAAA EVGLWALRHP LNPFAETLPS KTLAAAFDVF ETTTRRYGKP EFGLHETTID GKPVPITERI VWERPFCKVI HFEREPSAMK GVAPQQKLLI VAPLSGHYAT LLRGTVEAML PYHEVYITDW VDARKVPLTE GSFDLDDYID YVIEMCHALG PDLHLLAVCQ PSVPVFAAVA VMHDNDDAYV PLSMTLMGGP IDTRESPTEV NNLATERGTE WYERHVITTV PWPHPGVMRR VYPGFVQLSG FMAMNLDRHM DAHWNYFDHM VEGDGDSAEK HREFYDEYLS VMDMTSEFYL QTVDEVFVKH SLPKGEFTHR GKTVRPDAIT RTALMTVEGE KDDISGVGQT KAAHKLCKNL PASMKAHWEQ PGVGHYGVFN GTRWKSEIAP RVREFMAAHA KR
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