Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0009 |
Symbol | |
ID | 5454408 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 11463 |
End bp | 12647 |
Gene Length | 1185 bp |
Protein Length | 394 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640875568 |
Product | Bcr/CflA subfamily drug resistance transporter |
Protein accession | YP_001411289 |
Protein GI | 154250465 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily [TIGR00880] Multidrug resistance protein |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.000000450315 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGCTGG CGCCCGGCAC GGCGGCTTTC ACCGTGTTCC TGGCGTCGCT TACCGCGGTC GGCCCTCTGT CGACCGATAT GTATCTGCCG TCGCTGCCGG CTATCGGCGA GGATTTCAAC GCCGATGCGG GCACGGTGCA GCTTACGCTC AGCACGCATC TCATTGCCTT TGCCGGTTCG CAGCTTTTCT ACGGGCCGCT TTCCGACCGC TACGGGCGGC GGCCGGTACT GCTTGGCGGC TTCCTGCTTT TCATGGCGGG CTGCTTTGCC TCGCTTTTCG TCACCAGCAT CGAACAGCTG ATCCTTGCGC GCCTGTTGCA GGCGGTGGGC GGCGGCGCCT CCGTGGTGCT GGCGCGCGCC ATTGTGCGCG ATCTCTTCGA GGGGCCGGAA GCCGGACAGA TGCTCGCCAA GATGGCGGCG ATCATGGGGC TCGTGCCCGC GCTTGCGCCG ATGCTTGGCG GCGTGGTGCA GGATCTTTAC GGCTGGAAGG CGAACTTCAT CGCCATGGGC GCCTTCGGCG CGGTGCTGGC GCTGATGGTG GCGGTCAATC TCGACGAGAC GCTGCCGCGT GACCGGCGGC AAAGTGCTGC CCCGCTCTCG ATCCTGCGTT CCTACCGAAG GCTCCTCGCC GACCGGCACT TCCTCAAATA TCTCGCCATT GCGACCGTCG CCTTTTGCGG GTTGTTCGCT TTCGTTTCCG GCTCTTCCTT CGTGCTGCAG GGCCTTTATG GCTATTCGCC CATCGCCTAT GGGCTCTGCT TCGGCGCGAT GGCGGGCGGC TTCGTTGCCG GGTCGCTGGC GGGCGGACGG CTGGTGCGGC GGCGCGGCAT CGACGGCACA CTGCGCTTCG GCGGTTTCTG CGCGGCGCTT GGCGGGTTGC TGATGCTGAG CGGGTTGTTC CTGACGCCTT CGGCCATGGC GATCGTGCTG CCGGTCGTCA TCTATGGTTT CTCGATGGGC GTGACCATGC CACAGGCGAT GGCGGGCGCG CTGACGCCTT TCCCCGATAT TGCAGGCACG GCATCGTCGC TGCTCGGTTT TCTGCAATCC TTCGCGGGCG CGCTGGCGGG GCTTTATGTC GGGTATGGCG CGGAGGCAAG CGCACTGCCG ATGGCAGGCA CCATCGCGGC GGGGGGCGTG CTGAGTTTCG TCATTGCGAT GAGCGGCAGG CGGAAGACGA TCTAG
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Protein sequence | MKLAPGTAAF TVFLASLTAV GPLSTDMYLP SLPAIGEDFN ADAGTVQLTL STHLIAFAGS QLFYGPLSDR YGRRPVLLGG FLLFMAGCFA SLFVTSIEQL ILARLLQAVG GGASVVLARA IVRDLFEGPE AGQMLAKMAA IMGLVPALAP MLGGVVQDLY GWKANFIAMG AFGAVLALMV AVNLDETLPR DRRQSAAPLS ILRSYRRLLA DRHFLKYLAI ATVAFCGLFA FVSGSSFVLQ GLYGYSPIAY GLCFGAMAGG FVAGSLAGGR LVRRRGIDGT LRFGGFCAAL GGLLMLSGLF LTPSAMAIVL PVVIYGFSMG VTMPQAMAGA LTPFPDIAGT ASSLLGFLQS FAGALAGLYV GYGAEASALP MAGTIAAGGV LSFVIAMSGR RKTI
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