Gene Plav_0008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_0008 
Symbol 
ID5455107 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp9139 
End bp11466 
Gene Length2328 bp 
Protein Length775 aa 
Translation table11 
GC content66% 
IMG OID640875567 
Product1A family penicillin-binding protein 
Protein accessionYP_001411288 
Protein GI154250464 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0000000000321042 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCATCCC GGAAGGGCAA ATCCGGCCCT GGCAAACGAG GCGGCGCGGA GGAAGAAGAC 
TGGACCATCG TTCGGATGGC CGGTCTGCGT CCGGTCCGCC TCGGCGTAAA CGCCAACGCC
GATGCACGGC TCGACGAGGA AGGCGACGGC GACGACATGG GCTGGGACGA CGACTGGGAA
GGCCCCGGCA TGCGCCGCAC CGAGCCTACA TTCACGCGTG GCAAGCCCCG CAAGCCCACA
GCCAAACCGG CGAAGAAACC CGCCGCGAAA AAATCCCGTC CGAAGAAGCC GCCGGTGCTG
CGCGCGCCGA CAGAAGATGA GCGGCCCGGC TCCCGCACCC CGCCGCGCAA ATCCGCGCGC
CGCGGCGCCC CGCCCCGCAA GGGAAAGCCC ACTCTTCTCG GCCGCCTCGC CTATGGCGGC
GCCGTCCTCA TGCTCTGGGG CGTCATCGCC TTTGGCGGCC TCCTCTTCTG GTATGGGCTC
CATCTGCCGG ATACGTCGGG CCTCTATAAC GTCAAGCACA CGCCCTCCCT CTCCATCGTC
GCCACCAATG GCGAGGTGCT GAGCCATCGC GGCGATCTGA TGAGCGGCTA TGCCTCTCTC
TCCGATCTGC CGCCCTGGGT GCCCGCCGCC GTCCTCGCCA CGGAGGACCA GCGTTTCTAC
TGGCATTTCG GCGTCGACCC CATCGGTCTC GCCCGCGCCA CCATCACCAA TATTCGCGCT
GGCGCCTATG TGCAGGGCGG CTCGACGGTG ACGCAGCAGC TGGCGAAGAA CATCTTCCTG
AAGCCCGATC GCACCATCGC CCGCAAGATC GAGGAAATGG TGCTGGCCGT CTGGCTGGAG
CTGCGCTTCA CCAAGGAAGA AATCCTGACG CTCTATCTGA ACCGCGTCTA TTTCGGCGGC
GGCGCCTATG GCCTCGAAGC CGCCTCCGAG CGTTATTTCC GCAAGCCCGC CCGCGCCCTC
ACTTTGCCGG AAGCCGCCAT GCTCGCCGGT CTTTTGAAGG CGCCGTCCCG CTACTCGCCG
ACAAACAATA TCGAGCTCGC GCGCAATCGC GCCGCCATCG TGCTGCAGAA CATGGTCAAT
GCCGGCTACA TCACGCAGGA AGAAGCGCGC ACCGCGAATG TCAGTCCGGC GCGGCTTGAA
GGCTATGCGG CGCGCGGCTC GATCAATTAT TTCGTCGATT GGGTCGCCGA AGCCGTACCG
GATTATGCCG GCCGCCCGGA TACCGACGTC AATGTGATGA CGACAATCGA TCCCGTCCTC
CAGCGCGAGG CCGAAAGAGT GATCGACGCC ATGCTGGCGG GCGAGGGCGC GGCCGTGAAT
GCGACACAGG CCGCCCTCGT CGCCATGACG CCGGATGGCG CGGTGCGCGC CATGGTCGGC
GGCCGTTCCT ACGCGCAAAG CCAGTTCAAT CGCGCGGTGC AGGCAAAGCG CCAGCCCGGC
TCCGCCTTCA AGCCCATTGT CTATCTCGCC GCTCTCGAGC GCGGCCTCAC GCCGGATACG
CTGCGCGTCG ACCGCCCCAT CGAATATGGC GGCTGGGCGC CGGCGAATTA TTCCGGCCGC
TTCGAGGGCG AGATGACGCT CCGCACCGCG CTGGCGAAGT CGGTCAACAC GGTCGCCGTC
CAGGTCGCAC GTGAAACCGG CATCCGCAAT GTCATCGCCG CCGCGCGGCG TCTCGGCTTG
CAGGAAGACC TGCCGTCAAA CCTGTCGCTG GCGCTCGGCT CCGGCAGCGT CAATCTTCTG
GAACTCACCG CGGCTTACGC CACCTTCGCC AATGGCGGCT ATGGCGTCAT TCCGCATGGC
ATCGAGGAAG TCCGCTCCGA ATCCGGCGAG GAACTTTACC GGCGCCAGGG TTCGGGCATC
GGCCGCGTCG TCGATGGCCG CACCGTCGGC CAGATGAACA ACATGCTGCA GGCCGTCATG
GCCTATGGCA CGGGCCGCAA CTCTGCCTTG GGCGCGCGGC CGAGCGGCGG CAAGACGGGC
ACCAGCCAGG ATTTCCGCGA TGCCTGGTTC ATCGGCTACA CCGCCGATCT CGTGGTCGGC
GTCTGGGTCG GCAACGACAA TGGCGCGCCG ATGGAAAAGG TAACGGGCGG CACCCTTCCG
GCTCACATCT GGCACGACTT CATGATGAAG ACGCAGGAAG GCGTGCCGAT AGCGCAGCTG
CCGGAGGAAA TGCCGGTGGC AACCGCCTCC GCCAGCATCG CCGCGCCCGC CGCCATGCAG
GAAGCAGCGC CCGCCGAATA TGAGTGGGAA CAGCCGGGTT TCTTCGAGCG CCTCTTCGGC
ATCGGCGGCA ACGAGGACTC CACGCTCCGT GCGGGCGGCC GCCGCTAG
 
Protein sequence
MSSRKGKSGP GKRGGAEEED WTIVRMAGLR PVRLGVNANA DARLDEEGDG DDMGWDDDWE 
GPGMRRTEPT FTRGKPRKPT AKPAKKPAAK KSRPKKPPVL RAPTEDERPG SRTPPRKSAR
RGAPPRKGKP TLLGRLAYGG AVLMLWGVIA FGGLLFWYGL HLPDTSGLYN VKHTPSLSIV
ATNGEVLSHR GDLMSGYASL SDLPPWVPAA VLATEDQRFY WHFGVDPIGL ARATITNIRA
GAYVQGGSTV TQQLAKNIFL KPDRTIARKI EEMVLAVWLE LRFTKEEILT LYLNRVYFGG
GAYGLEAASE RYFRKPARAL TLPEAAMLAG LLKAPSRYSP TNNIELARNR AAIVLQNMVN
AGYITQEEAR TANVSPARLE GYAARGSINY FVDWVAEAVP DYAGRPDTDV NVMTTIDPVL
QREAERVIDA MLAGEGAAVN ATQAALVAMT PDGAVRAMVG GRSYAQSQFN RAVQAKRQPG
SAFKPIVYLA ALERGLTPDT LRVDRPIEYG GWAPANYSGR FEGEMTLRTA LAKSVNTVAV
QVARETGIRN VIAAARRLGL QEDLPSNLSL ALGSGSVNLL ELTAAYATFA NGGYGVIPHG
IEEVRSESGE ELYRRQGSGI GRVVDGRTVG QMNNMLQAVM AYGTGRNSAL GARPSGGKTG
TSQDFRDAWF IGYTADLVVG VWVGNDNGAP MEKVTGGTLP AHIWHDFMMK TQEGVPIAQL
PEEMPVATAS ASIAAPAAMQ EAAPAEYEWE QPGFFERLFG IGGNEDSTLR AGGRR