| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0004 |
|---|
| Symbol | |
|---|
| ID | 5456508 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3525 |
|---|
| End bp | 4643 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640875563 |
|---|
| Product | DNA polymerase III subunit beta |
|---|
| Protein accession | YP_001411284 |
|---|
| Protein GI | 154250460 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
|---|
| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.000114385 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 5.12755e-25 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCA CGATCGAGCG GGGCGCGCTA CTCAAGTCTC TCAATCATGT GCAGTCGGTC
GTCGAGCGCC GAAACACCAT ACCCATTCTC TCCAACGTGC TCATCAAGGC CGAGGACGGC
CAGCTGAGCC TGACGGCGAC CGATCTCGAC ATCGAAGTCG TGGAAGCGAT CGACGCGGAT
GTCGCCCAGC CCGGCGCCAC CACCGCCTCT GCGCACACGC TTTACGACAT CGTGCGCAAG
CTGCCCGAAG GCGCGCAGGT CGAATTGTCG ACCGGCGCCG ATGAAGGCCG CCTGCAATTG
ACGGCGGGCC GCTCGCGCTT CGCCCTCCAG TCGCTGCCGC AGGAAGACTT TCCGGTCATG
GCGGCGGGCT CGCTGCCGCA CCGCTTCGAG CTTCCGGCGG AGGCCATGCG CCGCCTCATC
GACAAGACCC GCTTTGCGAT CTCGATGGAA GAGACGCGCT ACTACCTGAA CGGCATCTAT
TTCCACGCCG TCGACGGGCC GAAGCAGAAA TCGCTGCGCG CCGTCGCGAC CGATGGTCAC
CGCCTCGCCC AGGTCGATCA CGACCTGCCG GAAGGCGCGG CCGGCATGCC CGGCGTCATC
GTCCCGCGCA AGACCGTGCT CGAATTGCAG AAGCTGCTGG AAGGCAACAG CGGCGCCCTC
TCGGTCGGCG TGTCGGAAAC GAAGATCCGC TTCGAATTCG GCGGCATCGT GCTGACCTCG
AAACTGATCG ACGGCACCTT CCCCGATTAT GGCCGCGTCA TTCCCGTCGG CAACGACAAG
ATGCTGCAGG TGGATGGCAA GCGTTTCGCG GAAGCGGTCG ATCGCGTCTC GACCATCTCC
ACCGAGAAAT CGCGCGCGGT GAAGCTCAAT ATCGAGGAGG GCAAGCTCAC CCTCTCCGTA
ACCAATCCGG ATTCCGGCAG CGCCACGGAG GAACTTTCCG TCTCCTATTC GAGCCCTGCC
ATCGAAATCG GCTTCAACGC GCGTTACCTG CTCGATATTA CCGGCCAGCT CGACGGGGCG
GAGGCAAGCT TCGCCTTCGC CGATTCCGGC TCGCCCACGC TTGTCCGCGA CAGCGAGGAC
AGCATGGCGG TCTACGTGCT GATGCCGATG CGCGTGTAG
|
|---|
| Protein sequence | MKITIERGAL LKSLNHVQSV VERRNTIPIL SNVLIKAEDG QLSLTATDLD IEVVEAIDAD
VAQPGATTAS AHTLYDIVRK LPEGAQVELS TGADEGRLQL TAGRSRFALQ SLPQEDFPVM
AAGSLPHRFE LPAEAMRRLI DKTRFAISME ETRYYLNGIY FHAVDGPKQK SLRAVATDGH
RLAQVDHDLP EGAAGMPGVI VPRKTVLELQ KLLEGNSGAL SVGVSETKIR FEFGGIVLTS
KLIDGTFPDY GRVIPVGNDK MLQVDGKRFA EAVDRVSTIS TEKSRAVKLN IEEGKLTLSV
TNPDSGSATE ELSVSYSSPA IEIGFNARYL LDITGQLDGA EASFAFADSG SPTLVRDSED
SMAVYVLMPM RV
|
|---|
| |