| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_1782 |
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| Symbol | rpoB |
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| ID | 5453057 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Fervidobacterium nodosum Rt17-B1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009718 |
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| Strand | - |
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| Start bp | 1937445 |
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| End bp | 1940993 |
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| Gene Length | 3549 bp |
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| Protein Length | 1182 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 640875551 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001411272 |
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| Protein GI | 154250447 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACCT ACCAAATTGG TAAACGTACA AGGTATTCTT TCGGTAAGGT TGATGAGATT
ATCCAAGTAC CCGACCTTGT TGAAATCCAG CGAAAGTCTT TCGAAGAGCT TTTGAACCAT
GGTATTTTAC GTATTCTTAA GAAGTTTAGC CCTATAACTT CTGCAAAAGT TGAAGGCAGA
AGAGAGAAGG GCTTCAATCT TGAGTTTGTA AACTTCAGAG TTGGTGCGCC ACTTCACAGT
GTTGAAGAAT GTAAGCAAAG ATTGTTAACT TATGTAGCTC CATTCTATGC AACAGTTAGG
GTCACAGATG TTTCAACCGG AGAAATGCGT GAAGAAGAGG TTTCTCTTGG AAACTACCCA
ATAATGACTG AAAATCAAAC TTTTGTAATT AACGGTGTTG AAAGAGTTGT TGTAAGTCAA
CTTGTTAGAA GCCCTGGCGT ATATTTTGTC GAAGAACCAA CAAAAAATAT TGGTGCTAAA
CCTATATACC TTGCTCATTT TCTACCGGTT CGTGGCGTAT GGTTAGAAAT AATGCTTAAC
TTAAACGATG AAACACTTTA CGCAAGAATT GATAGAAGAA AAAGACTCAA TCTATTCCTT
GTCTTAAAAA CACTTGGATT TCAAAATGAT ATAGATATAC TCTCGCTCTT CCCGGCTTAC
TTAGATGTCG AAGACGACTA TTCTTTAAAA CAATCTGAAG GAATAATTAT TCTCGAGAAA
ATTGTTTCAA AAAGCGGAGA AGTAATTGCA GAAAAAGGGT CAGTTCTAAC TTCGACACTT
GTCGAAATAT TAAGAGAACA TGGAATTGAA AAAATTAAAG TTGTTAATAA CTATATGTTC
AAAACATACA TGAAGCTTAA AGAAAAACTC AAAATGCCAT TAGAAGAAAA TATCAGTGAG
TTAAGAGCTT TCATGGAAAT ATACAAGGAA TTAAGACCCG GAGAAGTATT CAGATACAAT
GCCGCAAAAT CATATTGGAA TAACCTTTAC TTTAATGAAG AAAGGTTTGA ACTTTCAGAA
GTCGGTCGCT ATAAAATGAA TAAAAAATTG ACAAATGCCT ATAGAAAATA TTTGATTGAA
ATAGAAGGAA GAAATCCAAA AAGTGTTGAA CGGATAGAAT ACGAAGAAAA ATCGAATGCT
CTTACACCAA TAGATATTAT CTTGGTTATT AGAATGCTCC TTGAAACAGA AAAACATCCA
GAAACGTTGG ATACCAAAGA CCATCTATCG AATAAGAGAG TTAAAACAGT TGGTGAACTT
ATAGGTTCAG AATTTGAAAG AGCATTTTCG AAATCAATAC ATCAAATACA AGAAAAATTA
GCTACCTATA CAAGTTTAGA TAAAATATCT ATTCCAAGTT TAATAAACTT GAGAAATGTT
ATAGCTTCAT TGAATAGCTT CTTCGCTACA AACCCACTCT CCCAATTTAT GGACCAAGTA
AATCCAATTG CTGAATTAAC GCACAAAAGA AGGCTAACTG CAGTTGGACC TGGCGGTCTA
AAAAGAGAAA GAGCAAGATT TGAAGTTCGT GACGTTCACC ACTCACACTA TGGGAGGATG
TGTCCTATCG AAACACCTGA AGGTGGTAAC ATTGGTCTTA TAACATCACT TTCAGTTTAT
GCGACTATTG ATGAATACGG ATTTTTGGTA ACACCTTACA GAAGAATCAC CAATGGAAAA
TTAGCAAACG AAGTGGTCTA TTTAGCTGCT GATGAGGAAG AAAACTACAA AATAGCATCT
GTAACAATCG CTTTTGACAA AGAAGGGAAT ATAATACAAG AAAGGGTCCC CGTAAGGTAC
CTTGAAAAAA TAGTTTACGT TCACAAAAAT GAAGTAGATC TTGTAGATAT CTCTCCAAAG
CAGATAGTTA GTGTTACAAC ATCACTTATA CCATTCTTGG AACACGATGA CGCAAATCGC
GCGTTGATGG GTTCAAACAT GCAAAGACAA GCTGTTCCTG TTATAAAGCC AGAAGCACCA
TTTGTAGGTA CAGGAATGGA ATACGCAGCG GCTATTTACT CAGGTCACGT AGTGTTAGCA
AAGAATGATG GTGTAGTTAA AAAGGTTGAT GGTAGAAAAA TTATCATTCA CAGAATAGAT
GAAAATGGTC AACTAATGTA CGATAAAAAA GGTAACCCAA TAATTGACGA ATACACACTT
CTAAAATATG TAAGGTCAAA CCAAGATACA TCAATAACGC AAAAACCAAT CGTCAATGTT
GGTGATTTCG TAAAGAAAGG CTCGCCAATC GCTGATGGTC CAGCAACTGA CAATGGAGAA
CTTGCACTTG GAAAGAATGT ACTCGTTGCA TTTTTACCAT GGGAAGGTTA CAACTTTGAA
GACGCAATAT TGGTAAGTGA AGAGCTTCTT GAGGAAGATA CATTTACATC CGTACATATA
GAGGTTTACG AAACAACAGC AAGAGAAACA AGAGTTGGTC CAGAAGAAAT TACATCAGAA
ATACCAAATG TTTCAAAAGA AAATATTAGA AACCTTGACG AGAATGGAAT AATAAGGATA
GGTGCGTACG TTGGTAAACA AAAATACTTT ACATCACAGG ATATATTAGT TGGTAAAGTA
ACACCAAAAG GTGAAAGTGA CGCAAGTCCA GAAGAAAAAA TTATGAGATC AGTCTTTGGT
GAGAAAGGTA AAGATGTAAA GGATTCTTCA TTGAGGGTAC CACATGGTGT TGAAGGAAGA
GTTATAGGCG TTCACGTTTT CCATAAAGAA GAAGTCGGTG ATTTGGGACC TGGCGTAAAT
ACACTTGTGA GAGTCTACTT GGCAACTAGG AAACCATTAG AAGTCGGTGA CAAACTCGCT
GGTAGACACG GTAATAAAGG TGTTGTCTCG ATGATTCTTC CAAAAGAAGA TATGCCGTTC
TTACCAGATG GTACACCGGT TCAAGTTGTG CTTAGTCCTC TTGGTGTTCC ATCACGTATG
AATATCGGTC AGGTGCTTGA AACATCGCTT GGTTGGCTCG CAAAATTAAC TAACAGATAC
TTTGCAACGC CTGTATTTGA TGGAGCAAAA GAAGATGACA TACTACCAGA ACTTTACAAA
GTAAGAGAAA CACTTAACTT ACATCATGGC GATGATCCAA ATAATCCATC TGGAAAAGTC
ACGCTCAGAG ATGGTAGGAC AGGTAAAGAA TTTGATTTCC CAGTATTAGT TGGTTACATG
TACATTATGA AACTTATCCA CATAGCTCGA GATAAAATAC ACGCACGAGC AACAGGTCCA
TATTCGCTTA TTCACCAGCA ACCACTTGGT GGTAAAGCAC AATTTGGTGG TCAAAGATTT
GGTGAAATGG AAGTTTGGGC ACTTGAAGCC TACGGAGCAT CTTACACACT CAACGAAATG
TTAACAGTAA AGAGCGATGA CATAAAGGGA AGAACAGAAG TTTACAAAGC TATAATGAAG
AGTAAAAATC TCCCAGAACC CGGGTTACCT GAGAGCTTTA AAGTTCTTGT CAGAGAACTT
AAAGGTTTAG CTTTGGATGT AAGAGTATAC GATGAACACG GAAATGAAAT AGATATTGAA
AAATTATAA
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| Protein sequence | MKTYQIGKRT RYSFGKVDEI IQVPDLVEIQ RKSFEELLNH GILRILKKFS PITSAKVEGR
REKGFNLEFV NFRVGAPLHS VEECKQRLLT YVAPFYATVR VTDVSTGEMR EEEVSLGNYP
IMTENQTFVI NGVERVVVSQ LVRSPGVYFV EEPTKNIGAK PIYLAHFLPV RGVWLEIMLN
LNDETLYARI DRRKRLNLFL VLKTLGFQND IDILSLFPAY LDVEDDYSLK QSEGIIILEK
IVSKSGEVIA EKGSVLTSTL VEILREHGIE KIKVVNNYMF KTYMKLKEKL KMPLEENISE
LRAFMEIYKE LRPGEVFRYN AAKSYWNNLY FNEERFELSE VGRYKMNKKL TNAYRKYLIE
IEGRNPKSVE RIEYEEKSNA LTPIDIILVI RMLLETEKHP ETLDTKDHLS NKRVKTVGEL
IGSEFERAFS KSIHQIQEKL ATYTSLDKIS IPSLINLRNV IASLNSFFAT NPLSQFMDQV
NPIAELTHKR RLTAVGPGGL KRERARFEVR DVHHSHYGRM CPIETPEGGN IGLITSLSVY
ATIDEYGFLV TPYRRITNGK LANEVVYLAA DEEENYKIAS VTIAFDKEGN IIQERVPVRY
LEKIVYVHKN EVDLVDISPK QIVSVTTSLI PFLEHDDANR ALMGSNMQRQ AVPVIKPEAP
FVGTGMEYAA AIYSGHVVLA KNDGVVKKVD GRKIIIHRID ENGQLMYDKK GNPIIDEYTL
LKYVRSNQDT SITQKPIVNV GDFVKKGSPI ADGPATDNGE LALGKNVLVA FLPWEGYNFE
DAILVSEELL EEDTFTSVHI EVYETTARET RVGPEEITSE IPNVSKENIR NLDENGIIRI
GAYVGKQKYF TSQDILVGKV TPKGESDASP EEKIMRSVFG EKGKDVKDSS LRVPHGVEGR
VIGVHVFHKE EVGDLGPGVN TLVRVYLATR KPLEVGDKLA GRHGNKGVVS MILPKEDMPF
LPDGTPVQVV LSPLGVPSRM NIGQVLETSL GWLAKLTNRY FATPVFDGAK EDDILPELYK
VRETLNLHHG DDPNNPSGKV TLRDGRTGKE FDFPVLVGYM YIMKLIHIAR DKIHARATGP
YSLIHQQPLG GKAQFGGQRF GEMEVWALEA YGASYTLNEM LTVKSDDIKG RTEVYKAIMK
SKNLPEPGLP ESFKVLVREL KGLALDVRVY DEHGNEIDIE KL
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