Gene Fnod_1772 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFnod_1772 
Symbol 
ID5452919 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFervidobacterium nodosum Rt17-B1 
KingdomBacteria 
Replicon accessionNC_009718 
Strand+ 
Start bp1925188 
End bp1926234 
Gene Length1047 bp 
Protein Length348 aa 
Translation table11 
GC content35% 
IMG OID640875540 
ProducttRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 
Protein accessionYP_001411262 
Protein GI154250437 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 
TIGRFAM ID[TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0277772 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAGTGCTA AAGTAGGTGT TTTGCTTAGT GGAGGAGTAG ATAGCGCTGT TGCTTTATAT 
CTTTTAATTG AAAAAGGTTA TGAAGTAACT GCTTATCATA TGAAAACTGT AAGAGATGAG 
TTGTATATAA CAAAGCAGAT AAAGCATAAA GTCTGTTGTA GTCCGTCTGA TACACACGAT 
GCACAGTTAA TAGCAAAGAA ATTTGGCGTG CCTTTTAAGA TAATCCATGT TGAGGATGTG 
TTCAAGGAGA AAATAATAGA TTATTTCATA TCCGAAAATC TTGCGGGTAA AACACCAAAT 
CCTTGTTTTT TCTGCAATGA TTATATAAAG TTTGGATTTG TTATGGATGT TGCGCTTTCA 
GACGGTATGG ATTTTGTAGC ATCAGGTCAT TACGCAAGGA TATTAAATGG AAAGCTGTAC 
AGAGCTTTGG ATAAAGAGAA AGACCAATCG TACTTTTTAG CTTCAATAAA GAAGGAAAAA 
CTCAGCAAAA TTTTGTTGCC AAACGGTGAA TACAGTAAGG AAACAATTAG GGATATAGCT 
GAAAGAGCTG GGATTCATGT AGCTAAAAAG ATTGATTCTC AGGATTTGTG TTTTCTTCCA 
GATAACGATT TTAAGTCTTT CTTTGAAGAG CGTGGTGTTA AAATCGAGCC TGGGAATATA 
ATCACAAGTG AAGGAAAGAT AATAGGTAAA CATGAGGGGC TGCCATTTTA TACGATTGGG 
CAAAGAAAAC TTGGAGTGGC CGCTGGACAA AAACTTTATG TTAAAGCAAA AAATGTGGAA 
GGGAACTTTA TAGTTGTTTC TCCACTTGAT GAAGTGTATC AAAATGAAAT GCGAGTTAAA 
AATTTAAATA TATATGTAGA TTTACCTGAT GAGTTTTTGG CAACTGTAAA AATACGCAAA 
AAGTTTAAGG AAGTTCCTTG TCGTGTGGAA TATTTGAAAG ATGAACTGAA AGTACAATTC 
CTCGAACCAG TTTTTGCTGT CACCCCCGGA CAAATAGCTG TGTTTTATAA CGAAGACGAA 
GTGCTTTGCT CAGGAGTTAT AGAATAA
 
Protein sequence
MSAKVGVLLS GGVDSAVALY LLIEKGYEVT AYHMKTVRDE LYITKQIKHK VCCSPSDTHD 
AQLIAKKFGV PFKIIHVEDV FKEKIIDYFI SENLAGKTPN PCFFCNDYIK FGFVMDVALS 
DGMDFVASGH YARILNGKLY RALDKEKDQS YFLASIKKEK LSKILLPNGE YSKETIRDIA 
ERAGIHVAKK IDSQDLCFLP DNDFKSFFEE RGVKIEPGNI ITSEGKIIGK HEGLPFYTIG 
QRKLGVAAGQ KLYVKAKNVE GNFIVVSPLD EVYQNEMRVK NLNIYVDLPD EFLATVKIRK 
KFKEVPCRVE YLKDELKVQF LEPVFAVTPG QIAVFYNEDE VLCSGVIE