| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_1600 |
|---|
| Symbol | |
|---|
| ID | 5451649 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | + |
|---|
| Start bp | 1748267 |
|---|
| End bp | 1749133 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640875376 |
|---|
| Product | glucan endo-1,3-beta-D-glucosidase |
|---|
| Protein accession | YP_001411099 |
|---|
| Protein GI | 154250274 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2273] Beta-glucanase/Beta-glucan synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.715273 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTTA AATATTTCTC AAATATTTTG AAAATTGCTT CGATTATCGT TTTGTATCTT
TTTTCATCAT GCAATATATC GGAGGCGCTC GGCGTGAATG TGATGAATAT AAGTGATCCA
AAATGGAAAT TGGTCTGGTC GGATGAGTTT GATGGTAAGG AGCTTGATAA AAACAAATGG
AGATTTGATA TAGGAAATAA CAACGGATGG GGAAACAACG AACTTCAGTA TTACACAGAA
GGAAAAAACG TTAAGATAGA AAACGGGATG TTGATAATCG AAGCACGAAG GGAAGATGTC
AAAGATGGTA ATCGTACTTA CAATTACACA TCTTCGAGAA TAAAAACTGA AGGGTTATTT
TCAGTCCAGT ATGGTAAAGT GGAAGCGAGG ATAAAATTCC CGTATGGAAA AGGACTGTGG
CCCGCATTTT GGATGCTTGG TACAAACATC AGATACGTCG GTTGGCCTAT GTGCGGTGAG
ATAGATATCG TTGAATTCTT GGGTCATGAT AAATGGACGG TGTACGGTAC AATCCACGGA
CCTGGTTACA ACGGTGGTAA AGCCATATCG AAAAGTTTTA AAGCTGATGC CACGAAAGAC
AAATCCTTCG TTGATGAATT CTATGTTTAT GGTATCATGT GGAATGAAGA CGAGGTTGTG
TGGTACGTTA ACGATAAAAT CTATCACCGT GTTTCGAGAG AATCTTTAGA GAAACAAGAG
AAACTCTGGG TCTTTGATCA ACCGTTTTTC ATCATACTCA ACCTTGCAGT TGGTGGTAAC
TGGCCCGGAT ATCCAACGTT CGAAACACCA TTCCCAGCAA GGATGTACGT AGATTATGTC
CGTGTATACA AGCTTGAAAA TGAGTGA
|
|---|
| Protein sequence | MKVKYFSNIL KIASIIVLYL FSSCNISEAL GVNVMNISDP KWKLVWSDEF DGKELDKNKW
RFDIGNNNGW GNNELQYYTE GKNVKIENGM LIIEARREDV KDGNRTYNYT SSRIKTEGLF
SVQYGKVEAR IKFPYGKGLW PAFWMLGTNI RYVGWPMCGE IDIVEFLGHD KWTVYGTIHG
PGYNGGKAIS KSFKADATKD KSFVDEFYVY GIMWNEDEVV WYVNDKIYHR VSRESLEKQE
KLWVFDQPFF IILNLAVGGN WPGYPTFETP FPARMYVDYV RVYKLENE
|
|---|
| |