| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_1559 |
|---|
| Symbol | |
|---|
| ID | 5451777 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | + |
|---|
| Start bp | 1697586 |
|---|
| End bp | 1698587 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 640875334 |
|---|
| Product | alanine racemase |
|---|
| Protein accession | YP_001411059 |
|---|
| Protein GI | 154250234 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000066632 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTAACAA TCAAAGACGT AGCAAGAGAA GCAGGAGTTT CTATAGCAAC GGTTTCGAGG
GTCATAAATG GCTTCAGTAA CGTAAATGAA GAGACAAGAA AGAAAGTCTT GCGGGCGATA
AAATCACTTG GTTACAAGCC GATGCCTTCA CTTAGGAAGG CATCGGAACT TCTTTATACT
ATAGGGGTTT TATTACCAAA TTTAAAGGGC GATCATTACA ACGAAATACT TATGGCTATA
GAAGATTACG CAAAGAGAAA TGATTTCGAA GTGATGGTCT CGGTTCCTAA TATGCTTCCA
GAAGAGGAAA AGCATGTTTT GGATCAGTAC TTTAAAAGAA AGATCGATGG GATAATTTTG
TGTGAATTAT TTGGAGGTGT TGAGTATCTT AAACCTTTCA TAAACAGTGG AGTGCCAATT
GTGGCCCTCG ATTACTATAT AGAAGAGGTT GTTTGCGATT CCGTAAATAT AGATAATTTA
ACAGGTGCGA TGAATGCTAT GAAATATCTG TACAAAATGG GGCACAGAAA GATACTTTAC
GTAAAGGGAC CACAGTATTC ACCAGCCTCG AGAAATAGAG AAAAAGGTAT TAAAAAGTTC
TTAGACAGAC ATAAAGATGT TGAGGTATTT TTTAGCGAAC ATGAAGGGTT TAATCCTGAA
GATGGATATC AATCCGTAAG TGAATTTTTG AAAAAAAGAG GGAAGTTATT TACAGCTGTT
TTTTCTGTAA ATGATTGGTC AGCGATAGGA GCGATTAGAG CGTTAAAGGA AAATGGGTTA
GAGATACCAG AAGATGTTTC AATTATTGGT TACGATGATG CACCGTATTC TGAATATCTT
TACCCACCGT TGACAACTAT CCGACAACCG CGTTGGGAAA TGGGACAAAT GGCAGCTCAG
TTACTAATCG ACAGGATTCT TGGAAAGGGA CCAAAGATTG CAAGAAATGT ACTTTTACCT
ACTCAATTGA TTGAAAGACA GTCTGTCAAG AAAATTGGAT AA
|
|---|
| Protein sequence | MVTIKDVARE AGVSIATVSR VINGFSNVNE ETRKKVLRAI KSLGYKPMPS LRKASELLYT
IGVLLPNLKG DHYNEILMAI EDYAKRNDFE VMVSVPNMLP EEEKHVLDQY FKRKIDGIIL
CELFGGVEYL KPFINSGVPI VALDYYIEEV VCDSVNIDNL TGAMNAMKYL YKMGHRKILY
VKGPQYSPAS RNREKGIKKF LDRHKDVEVF FSEHEGFNPE DGYQSVSEFL KKRGKLFTAV
FSVNDWSAIG AIRALKENGL EIPEDVSIIG YDDAPYSEYL YPPLTTIRQP RWEMGQMAAQ
LLIDRILGKG PKIARNVLLP TQLIERQSVK KIG
|
|---|
| |