| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_1554 |
|---|
| Symbol | |
|---|
| ID | 5451541 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | + |
|---|
| Start bp | 1692350 |
|---|
| End bp | 1693339 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 640875329 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001411054 |
|---|
| Protein GI | 154250229 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.136155 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGT ATTTAAGAAC AAAAATATTA GTCTACATTC TTACTTTTAT TTTCGCAGTT
ACTATAGATT GGTTGATTCC CAGGCTCATG CCTGGGAATC CCATTCTTGT TTTAGTTTCG
AGGTTCTCAG GTTTGCCAGA ATCTGCAAGA GTAATGTACA GTTATTTAAC TAAAGCGTTT
GGTTTAGATT TGCCGATGTG GAAACAATAC ATAAATTTCT GGGTGGCTCT ATTTAAAGGA
GACCTTGGAA TAAGTATATA CCTTTATCCG AAACCAGTTT TGGATATCCT CAAAAGTGCG
CTTCCTTATT CTTTAAGTAT CCTAATTCCA GCTATTTTGC TGAGTTGGTT TGTAGGTAAC
AATCTTGGTG CTATTGCTGC CAGACGAAAA AAATTAGACT CGATTATGCT CCCTATAATG
TACTTTTTAA CTGGTGCACC TTATTTATGG TTTGGTATTT TACTCGCTTA CTTTTTAGGC
TTCTTATTAG GATGGTTTCC AATATCTGGT GCTTATAGTT TTTCCTTGAG ACCACATCTT
TCTTGGCTTT TCATAGGAGA TTATTTAAGA CATTGGTTTC TTCCATTTTT CTCACTTTTT
ATAGTACAAC TTGGTGGTTG GGCAATAGGA ATGAGAAACA TGGTTATTTA TGAACTTGAG
AATAATTATG TACGATACTT AGAAACTTTA GGTGTTAAGA GAAATTTGAT AAGGAAGTAT
GCTTTTAGGA ACGCAATACT TCCGCAAGTT ACAGGTTTGG CATTGCAACT TGGAACCGTT
ATAGCTGGTC AAGTTACCAC AGAAGTTGTT TTTTCATATC CTGGAATAGG GTACGTGCTA
ACGCAGGGAA TACTCAATCA AGATTATTTT CTTATACAAG GTTGTTTCCT TTTCATAATA
ATAGGAGTTT TAGTTGCCAA TTTTACCGTT GACTTGGTAT ACATGATTCT TGATCCGAGA
GTTAGATATT CTTACGGTGG TGAGATTTGA
|
|---|
| Protein sequence | MKKYLRTKIL VYILTFIFAV TIDWLIPRLM PGNPILVLVS RFSGLPESAR VMYSYLTKAF
GLDLPMWKQY INFWVALFKG DLGISIYLYP KPVLDILKSA LPYSLSILIP AILLSWFVGN
NLGAIAARRK KLDSIMLPIM YFLTGAPYLW FGILLAYFLG FLLGWFPISG AYSFSLRPHL
SWLFIGDYLR HWFLPFFSLF IVQLGGWAIG MRNMVIYELE NNYVRYLETL GVKRNLIRKY
AFRNAILPQV TGLALQLGTV IAGQVTTEVV FSYPGIGYVL TQGILNQDYF LIQGCFLFII
IGVLVANFTV DLVYMILDPR VRYSYGGEI
|
|---|
| |