Gene Fnod_1391 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFnod_1391 
Symbol 
ID5451609 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFervidobacterium nodosum Rt17-B1 
KingdomBacteria 
Replicon accessionNC_009718 
Strand+ 
Start bp1501442 
End bp1502407 
Gene Length966 bp 
Protein Length321 aa 
Translation table11 
GC content39% 
IMG OID640875166 
ProductCRISPR-associated RAMP Csm4 family protein 
Protein accessionYP_001410894 
Protein GI154250069 
COG category[L] Replication, recombination and repair 
COG ID[COG1567] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) 
TIGRFAM ID[TIGR01903] CRISPR-associated RAMP protein, Csm4 family 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTAACCT ATCGGGTAAA GCTTAGATTC AAGGGACCGA TTCATATTGG ATACCTTGAT 
AGAGTATTTG AAGTTTCTGA TGCTACGATT CATGCAGATA CCATCTTCTC AGGGCTCATT 
AACTCTTATA ACTTACTTTT CGGAAGTGAG AAAACTAAGG AACTACTTGG GAAAATAGAC 
AATAGTCACT CAGAGCTACT TTTATCGTCG ACATTCTTTT ACGTAGGAGA CAAATATTTT 
CTTCCAAAAC CAAAGGGTGA AACATTTGGT TTAGAGAATA AAATTGAACA AGTTAAGAAA 
ATTAAGAAGA TTAAGTTCGT TGAAGACAAG GTATTACTGG AGAATTCATC GCTTAGCGAA 
GAAAACATAG ATATACCCTT CATACTCTCA GGAAAAGCCG ATGCAGCGAT TGCGAAGTTC 
TATGAAGTTC TAGAACGTCC GAGAGTCATG GTTGCGCGGG ATTATTCTCA ATCGAACCTG 
TTTTATTTCT CTGAAGTCCA TTTCAAAGAG GGCAGTGGGC TATGGTTTTA CTTAAAAGTT 
AGCGACGATA TAGAAAAAGA AGTATTGGCG GCTTTGAAAC TGCTTTCCGA TGAAGGAATA 
GGCGGAGACA GAACTTACGG CTTTGGCCAA TTTGAGTATG ATTTAACACA GGTGAATCTT 
CCAGAACAAG GAGAGAACTA TTTACTTCTC TCACCATATA TTCCAGATTC GGAAGATTAC 
GAAGAAAACT CGAAAGAAAT CACAAAGCTT GCAAAGGCGT ACGAACTACG ATACAGAACA 
GGTTACATCC ACAACAGCGA CAAAAAGGCA AAAAGAGTGA CAATGTTCGC AGAAGGAAGT 
GTATTCACAA AACCAGTAAA AGGAAAAATA CTTGACGTAA CACCCGACAA CTTCGAATAC 
GATTACAGAA TATACAGATA CGGGAAAGCA TTCCTACTCC CGTTTAAAGG GGGTACAAAC 
ACATGA
 
Protein sequence
MLTYRVKLRF KGPIHIGYLD RVFEVSDATI HADTIFSGLI NSYNLLFGSE KTKELLGKID 
NSHSELLLSS TFFYVGDKYF LPKPKGETFG LENKIEQVKK IKKIKFVEDK VLLENSSLSE 
ENIDIPFILS GKADAAIAKF YEVLERPRVM VARDYSQSNL FYFSEVHFKE GSGLWFYLKV 
SDDIEKEVLA ALKLLSDEGI GGDRTYGFGQ FEYDLTQVNL PEQGENYLLL SPYIPDSEDY 
EENSKEITKL AKAYELRYRT GYIHNSDKKA KRVTMFAEGS VFTKPVKGKI LDVTPDNFEY 
DYRIYRYGKA FLLPFKGGTN T