Gene Fnod_1387 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFnod_1387 
Symbol 
ID5453266 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFervidobacterium nodosum Rt17-B1 
KingdomBacteria 
Replicon accessionNC_009718 
Strand+ 
Start bp1496635 
End bp1497624 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content37% 
IMG OID640875162 
ProductCRISPR-associated Cas1 family protein 
Protein accessionYP_001410890 
Protein GI154250065 
COG category[L] Replication, recombination and repair 
COG ID[COG1518] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03641] CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGCTC TATATGTTTT TAAAGACTCA TATCTAAGAA AGAAAAGCTC TGCGCTTTAC 
ATAGAACCAA AATCTGAGGA CCAAAAGCCG ATCTATGTTC CATTAAAAAA CATATCTTCA 
ATAATGGTGT TCTCTGAAAT AGAAATGAAC AAGAAGACTC TTGAATTGTT CTCATATTCG 
CAGGTTCCTG TGTTCTTTTT TAACTACAAC GGAGAATACA TCGGTTGCTT CTATCCAGTT 
GAAGAAAACA AAACGGGAGA AATGCTACTA CTCCAACTGC AACACTATCA AGACTTGGAA 
AAGCGCATAA TAATAGCACG AGAGATATTA TACGGAGTGG CGGACAATAT CTTGAAAATT 
TTGAAAAGTT ACAAAAACGA CTTTCCCGAG ATAAACGAAA AAATCGAAAT GATAGAGAAA 
CTCAAAAAAA CTTACCATCG GCAAGAAGAA ATAGCTTCAT TGATGGCTAT AGAAGGCAAT 
ATACGCAAGA ACTATTACGA AGCACTTGGT GTTATATTCT CGAAAAAAGA TTTCACATTC 
CAAGAAAGAA CAGCAAGACC TCCAGCGGAC GAAATAAATG CGATGATTAG CTTTGGCAAT 
ACCATATTGT ACAACGTCGT GCTTTCAGAA ATATTCAAAA CGTCGCTTGA ACCTGCAATA 
AGTTTTCTGC ACGAACCCAA CAAAAGGAAA TTCTCGTTAC AGCTTGACAT TGCAGAAATA 
TTTAAACCTA TCATTGTTGA CCGAACAATT TTGACTCTTG TTAACCGTTC AATGATTAAG 
AAAGACGACT TTAAGAAAGT GGAAGGGGGG GTTTATCTTA ACGAAACTGG GAAAAAGAAG 
TTTGTTAAAG CACTCGAGGA GAAATTATCT GAAACTATTG ACTACGAGAA CGGTCAAAGA 
ATGTCATGGA GAACGGTGAT ACGTTATGAA TGCTACAAGC TCATCAGGCA CTTGAAAGAA 
GAACAGGCTT ACCAAGCATT TAGGTGGTAA
 
Protein sequence
MEALYVFKDS YLRKKSSALY IEPKSEDQKP IYVPLKNISS IMVFSEIEMN KKTLELFSYS 
QVPVFFFNYN GEYIGCFYPV EENKTGEMLL LQLQHYQDLE KRIIIAREIL YGVADNILKI 
LKSYKNDFPE INEKIEMIEK LKKTYHRQEE IASLMAIEGN IRKNYYEALG VIFSKKDFTF 
QERTARPPAD EINAMISFGN TILYNVVLSE IFKTSLEPAI SFLHEPNKRK FSLQLDIAEI 
FKPIIVDRTI LTLVNRSMIK KDDFKKVEGG VYLNETGKKK FVKALEEKLS ETIDYENGQR 
MSWRTVIRYE CYKLIRHLKE EQAYQAFRW