| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_1364 |
|---|
| Symbol | |
|---|
| ID | 5453022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | - |
|---|
| Start bp | 1474505 |
|---|
| End bp | 1475539 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 640875140 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001410868 |
|---|
| Protein GI | 154250043 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAA AGTTTGGATT GCTTTTTTTA TTAATTTTGC TTTCCTCTTT TCTTCTTTTC
AATTTAGTCT CTAGCTGTAA TCGTTCAAAC ACATTGCATA TTTACAACTG GGCGGATTAC
ATCCCCGAAG AGGTTATAAA AGAATTCGAA AAAGAATACA ATTGCAAAGT CGTATACGAT
ACATACTCTT CAAACGAAGA AATGTACTCA AAACTCAAAC AAGGCGGGAC TGGTTACGAC
ATCGTCTTCC CATCTGGAGA CCATGTTAGA ATGATGATAA ACGATGGAAT GCTGGAAAAA
TTGGATCTTT CTAGGATACC GAACATAAAA AATATTGACC CTATCGTTCT TTCAAAGACA
ACATTCGACC CAGACCATGA ATATTCCGTT CCATACATGA TGGGAACAAC AGGAATTATT
GTAAACAAAA AATTCTTGAA AAGCTTTGAG AAATCCTGGA GCATATACGA ACGCGCAGAT
TTAAAAAACA AACTCACATT ACTTGACGAT ATGCGCGAAG TGTTTGGAGC CGCGCTCAAA
TATTTAGGAT ACTCTGTCAA TTCAACCAAC CCAGAAGAAA TCGAACAGGC AAAGCAAGTA
ATACTAAAAT GGAAAGAAAA TATCATCAAA TTTGACGCCA CAACTTACGC ACAAGGAGTA
GTTAATGGCG AATTTTGGGC AGTCCATGGT TATCCAGAAA ACGTCTTCCA ATTAATTCCA
GAAGAGGAAC GCGATAACTT CGAATTCTTC GTTCCAAAAG AAGGAGGTAC ACTCTGGATA
GATAGCATGG TAATTCTCAA AACATCGAAA AACAAAGACT TGGCTTACAA ATTCATAAAC
TTCATCCTTA GACCGGAAAT CTCAGCAAAG ATTTCAGATT ATCTAATGAT TCCATCACCT
GTTACAGATG CGGTAAATTA CAAAGAAGTG GCAAATATCT ACGAAATCTC AGACCTTGAG
AACTGCGAAA TAATCGATTA CCTTGGTGAT AAAATCGACC TTTACAACAA AGCATGGGAA
GAAATCATAA AATAA
|
|---|
| Protein sequence | MMKKFGLLFL LILLSSFLLF NLVSSCNRSN TLHIYNWADY IPEEVIKEFE KEYNCKVVYD
TYSSNEEMYS KLKQGGTGYD IVFPSGDHVR MMINDGMLEK LDLSRIPNIK NIDPIVLSKT
TFDPDHEYSV PYMMGTTGII VNKKFLKSFE KSWSIYERAD LKNKLTLLDD MREVFGAALK
YLGYSVNSTN PEEIEQAKQV ILKWKENIIK FDATTYAQGV VNGEFWAVHG YPENVFQLIP
EEERDNFEFF VPKEGGTLWI DSMVILKTSK NKDLAYKFIN FILRPEISAK ISDYLMIPSP
VTDAVNYKEV ANIYEISDLE NCEIIDYLGD KIDLYNKAWE EIIK
|
|---|
| |