| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_1326 |
|---|
| Symbol | |
|---|
| ID | 5452277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | - |
|---|
| Start bp | 1430734 |
|---|
| End bp | 1431621 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640875102 |
|---|
| Product | spermidine synthase |
|---|
| Protein accession | YP_001410830 |
|---|
| Protein GI | 154250005 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0421] Spermidine synthase |
|---|
| TIGRFAM ID | [TIGR00417] spermidine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGATA AAGGACTCGA AAAAGAATTA AAACCCGGTA GACATATGTT GTATATGGAA
TGGTATTCGA AAGATCCCGG TGGATTATTC ATGAAAGTTA ATAGATATTT GTACTCAGCC
CAGAGTCAGT ATCAAAGAAT AGATATATTT GAAGCACCAT TTTATGGAAG AGTGTTTTCA
CTAGATGGTA TTACAATGAC AACGGAAATC GATGAATTCA TGTACCATGA AATGCTCGTT
CACGTACCAA TGTTTATGCA TCCAAATCCA AAGAAAGTCC TTGTTATCGG TGGCGGTGAC
GGTGGAAGCA TAAGAGAAGT TTTAAAACAC CCATCCGTTG AAAAAGCGGT AATGTGTGAG
ATTGACGAAC TTGTTGTAAG AGCTGCTATG GAATATCTCC CATACACCGC ATCAAAGTTA
ACAGACCCAA GAGTAGAGCT TGTTTACGAA GACGGTGCGA AGTTCGTAAG GCAATTTAAA
AACGAGTTTG ACGTTATTAT AATTGACTCA ACCGACCCAA CAGCAGGGGA AGGTGGGCAC
CTATTCACGC TTGACTTTTA CAAGGCATGT AACGAAGCTT TGAAAGAAGA TGGTATTTTG
TGTGCTCAAA CTGAAGGCAT GACATACGAC TACGAATGGG GTTCAACTGC TTACAAAAGA
ATTAAGGCAA ACTTCCCGCT TGTAAAGATG TACCTTGGCT TTATGCCAAC GTATCCCGGA
GGTATTTGGT CTTACACTTA CGCTTCAAAA GCAGGAATTG ACCCAGTTAA AGATTTCAAT
CCAGATAAAG TAAAAAATTT CAGAGAACCG TTAAGATATT ACAATGAAGA AATACACATA
GCTGCATTTG CACTTCCGAA TTTCGTAAAA AAATACATAG AAGAATAA
|
|---|
| Protein sequence | MADKGLEKEL KPGRHMLYME WYSKDPGGLF MKVNRYLYSA QSQYQRIDIF EAPFYGRVFS
LDGITMTTEI DEFMYHEMLV HVPMFMHPNP KKVLVIGGGD GGSIREVLKH PSVEKAVMCE
IDELVVRAAM EYLPYTASKL TDPRVELVYE DGAKFVRQFK NEFDVIIIDS TDPTAGEGGH
LFTLDFYKAC NEALKEDGIL CAQTEGMTYD YEWGSTAYKR IKANFPLVKM YLGFMPTYPG
GIWSYTYASK AGIDPVKDFN PDKVKNFREP LRYYNEEIHI AAFALPNFVK KYIEE
|
|---|
| |