Gene Fnod_1290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFnod_1290 
Symbol 
ID5452831 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFervidobacterium nodosum Rt17-B1 
KingdomBacteria 
Replicon accessionNC_009718 
Strand+ 
Start bp1392454 
End bp1393026 
Gene Length573 bp 
Protein Length190 aa 
Translation table11 
GC content34% 
IMG OID640875066 
Product2'-5' RNA ligase 
Protein accessionYP_001410794 
Protein GI154249969 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1514] 2'-5' RNA ligase 
TIGRFAM ID[TIGR02258] 2'-5' RNA ligase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.189928 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGAACAT TTGTGGCTAT TGATATAAAC GAAGAAATTA GAGAGATAGC CAAAGAGGTA 
ATAGATAAAC TTCAGAATAT AGGGTTTAAA GCCAATTGGT CTAAGCCTGA GAATCTTCAC 
TTAACGTTAT TTTTCATGGG AGAGATGGAT GAAAAAAGCG TAGATTTTAT GTCGCAAACT 
TTGAACAAAA GGATGTACGG TTTTCCATCT TTCAGCACAT CTTTGAATGG GTTTGGCTAT 
TTTAAATTTA AGAACTCTCC AAGAGTTTTG TTTTTAAAAC TTGAATCAAC TAAATCTCTT 
CAAAAGATGT ATTTGGAGAT GAAGTCTGAA TTGAACAAAC ACAAGATAAA GTATGATGAT 
CAAGGGAATT TTGTCCCTCA TATAACTCTT GGAAGAGTAA AAGAGTATCC AGACAAGTGG 
GAAGAACTTG TTTCTCAAAT AGAAATTCCT AAATTAACGT TGGTCATTGA TGGATTTACT 
GTTTACAGTT CCACTTTGAC ACCGCAAGGA CCTATCTACA AGTGGATCTA CAAATCAAAG 
TTTGAAGGAG GTTTGATTAA AAATGTCAGA TGA
 
Protein sequence
MRTFVAIDIN EEIREIAKEV IDKLQNIGFK ANWSKPENLH LTLFFMGEMD EKSVDFMSQT 
LNKRMYGFPS FSTSLNGFGY FKFKNSPRVL FLKLESTKSL QKMYLEMKSE LNKHKIKYDD 
QGNFVPHITL GRVKEYPDKW EELVSQIEIP KLTLVIDGFT VYSSTLTPQG PIYKWIYKSK 
FEGGLIKNVR