| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_1233 |
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| Symbol | |
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| ID | 5452689 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Fervidobacterium nodosum Rt17-B1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009718 |
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| Strand | + |
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| Start bp | 1327914 |
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| End bp | 1330478 |
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| Gene Length | 2565 bp |
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| Protein Length | 854 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 640875009 |
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| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein |
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| Protein accession | YP_001410737 |
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| Protein GI | 154249912 |
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| COG category | [I] Lipid transport and metabolism
[J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1
[COG0761] Penicillin tolerance protein |
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| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)
[TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAATG AAACAAATAA AGTGAATTTA GAAATTATAG TTGGCCAATA TGGCTTTTGT
TTTGGTGTTG ATAATGCTGT TAGAGAGATA ATAGACCACT TAAATAAAGG CGAAAACCTC
TTTACTGATG GCGAAGTTGT ACACAATAAA AATGTTCTTG AAGAATTGAA AAGACTTGGT
TTGAAGTACT CACCTCAAGA AAATGGTACT TTTGTTGTAA GGGCACATGG TCTGCCACCT
GAAAAGTTGA ATGAAATATC AAAAAATTAC AAAGTTATCG ATTTGACATG TCCAATTGTT
CAGAATCTTT TTGCTCTTGG AAAGAAATTA TCAAAAGAAG GATACAAAGT TGTAGCTTTT
GGAAAGAAAG ATCATGCAGA AATGGTAGCT TTTGCCGGAC ATGTAAAAAA TTCTTTAGTT
ACTACTGAAC CATTACCCTT GCTAGACAAT AAAATAGCAA TAATTAGTCA AACAACAAGC
TCTAGCGAAA AATTTGCTTT GTTTATTGAA GAAATGAAAA AATTAAACAA AGGTAAAGAG
ATAAAAGTCA TAAACACAAT TTGTAAAGTC ACCATTGAAA GAGAAGAACA AGCAAAAAAG
CTTGCCCAAA TTTGTAATTT CGTTGTTGTC GTTGGAGGTA AAAATAGCTC AAATACCAAA
AAACTATTTG AGATAGCATA TAACTATGGC AAAGCTGTAC ATATAGAAAG CATCAATGAA
ATTAACGAAA TAGAAGAAAT GTTGTTTAGA GAAAAATCAA AAGATATCCA AACCATCAAA
ATAGGTTTAA TAAGTGGTAC ATCTACATAT TCTAAAGATG TCGAACACAT CTTAAAGTAT
CTTGTAAAAA ACTACGGTGG GAGGGAACTT TACATGGAAG ATTTAAACAA CTTAAAACAA
GAAGTCTTGG AGGAATCTTT TGAACAGCTA TTAAAAGAAC ATGAAAACAT GAATCAAGTG
GGAAGGGGAA AGATTGTTGA AGGTATCGTA ACAGAAATTA CACCCACGGG ACTAACAATT
GACCTTGGTG GAAAGGTAAC AGGAGTTGTT CCTTTAGAAG AACTTTTCAA AGAACTTAAT
GAATATAAAG TTGGTGAACA AATCAAAGTT AGAGTTGAAA AAATTAACGA AGAAGATGGA
ACCGCTATCC TTTCCGCAAA GAAACCTATG GAAAAGATAA TATTTGATGA AATACAAAAA
GCAAAAGAAA ATGGAAAACC AGTAAGTGGA AAGATAATCG AAAGAATAAA AGGTGGATAC
AGGGTCATCC TCGAAAATGT TGTTGAAGCG TTCTTGCCCG GTAGTGAATC AAATATAAGA
GAAGATGAAG AAATACCAAG AGAAAAAATG CAATTTGCCG TAATTTCTTA CGAAACACGT
GGTAGAAAAA CAAATATCGT TGTTTCAAGA AAAAAACTTT TCCAAAAACT TATAGACGAA
TTCTTCTCAA ATAGAAAACC GGGCGATGTA GTCGAAGGAA TAGTCGAATC TATTTCTGAT
AATGGCGCAT TTGTAAAAAT CGCGGGTATA ACAACGGGCT TCATACCAAA TAGCGAAATA
TCTTACAACA CATCAATTAA AGCCAAAGAT GCTTTGACCG TTGGGAAAAT TATGAAGTTC
TTAATCAAGG AAATAAATCC TGAAAGAAAA AGAATACTTT TAAGTCTTAA AGCACTATTA
CCTGATCCTT GGGAAAACGT TGCTAAAAAA TACCAGATTG GTCAAACTGT TACCGGAGTT
GTAACATCAG TAAAACCTTT CGGCTTTTTC GTGAAAATTG AAGATGGTGT TGAAGGCTTC
GTACCTATTG AAGAAGTTTT CTGGGGAAGA AAAGGGAATA TAAACGAAGT CGTTAGCATC
AACGATTTTG TCAAAGTTCA AATTTTAGAA ATTAACCCAG AGAAACGTCA AATGAAACTT
AGCTACAAAA GTGTTATCGG AGATCCTTGG GAAAAAATAG CTAAGAAATT ATCCGAAGGA
GATATAAGCG AAGGCAAAGT AGCAAAAGTA CTTCCGAATG GTGTAATTAT AGAAATCGAA
CCTGAAGTAA CCGCATTTTG CAATATTTCT GAAGTTTCTT GGAATTTTGT CGATAACATC
GAAGATGTAA TAAAAGAAGG AGAAAGTGTA AAATTCCAAG TACTCAAAAT CGATCCAGAA
AATAAAAAAA TCCGCGTTAG CATACGTAAA GCCAAGCCAA ACCCTTGGAA AGCATTTGCC
AATGCTCATA AAGAAGGAGA CATTATTAAA GTAAAAGTAA TAAAAGCTGT AGAAAAAGGT
TACATAGGTC TTTGTGAAGA AATAGAAGTG TACATTCCGA AATCACAAGT TTACGAAAAT
TTAAATTTGG GCGATGAAAT AGATGGTAAA ATAATTAAGC TTGAAGAGCA AAAAGATATT
TACAAAATTA TCGTTAGCCC AAAAGCATAC GAAAACTCAC TGGCAACTAA TAAAAATGAA
TCGAAAGACT TTGAAGGAGT AACGTTGGAG GGAAAAATTT CTGATGCAAA CGCCGTCAGT
GAAGAAAAAC AAAATACCAA CAGTTATTTT AGTAGGGAAG AGTAA
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| Protein sequence | MSNETNKVNL EIIVGQYGFC FGVDNAVREI IDHLNKGENL FTDGEVVHNK NVLEELKRLG
LKYSPQENGT FVVRAHGLPP EKLNEISKNY KVIDLTCPIV QNLFALGKKL SKEGYKVVAF
GKKDHAEMVA FAGHVKNSLV TTEPLPLLDN KIAIISQTTS SSEKFALFIE EMKKLNKGKE
IKVINTICKV TIEREEQAKK LAQICNFVVV VGGKNSSNTK KLFEIAYNYG KAVHIESINE
INEIEEMLFR EKSKDIQTIK IGLISGTSTY SKDVEHILKY LVKNYGGREL YMEDLNNLKQ
EVLEESFEQL LKEHENMNQV GRGKIVEGIV TEITPTGLTI DLGGKVTGVV PLEELFKELN
EYKVGEQIKV RVEKINEEDG TAILSAKKPM EKIIFDEIQK AKENGKPVSG KIIERIKGGY
RVILENVVEA FLPGSESNIR EDEEIPREKM QFAVISYETR GRKTNIVVSR KKLFQKLIDE
FFSNRKPGDV VEGIVESISD NGAFVKIAGI TTGFIPNSEI SYNTSIKAKD ALTVGKIMKF
LIKEINPERK RILLSLKALL PDPWENVAKK YQIGQTVTGV VTSVKPFGFF VKIEDGVEGF
VPIEEVFWGR KGNINEVVSI NDFVKVQILE INPEKRQMKL SYKSVIGDPW EKIAKKLSEG
DISEGKVAKV LPNGVIIEIE PEVTAFCNIS EVSWNFVDNI EDVIKEGESV KFQVLKIDPE
NKKIRVSIRK AKPNPWKAFA NAHKEGDIIK VKVIKAVEKG YIGLCEEIEV YIPKSQVYEN
LNLGDEIDGK IIKLEEQKDI YKIIVSPKAY ENSLATNKNE SKDFEGVTLE GKISDANAVS
EEKQNTNSYF SREE
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