Gene Fnod_1216 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFnod_1216 
Symbol 
ID5452036 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFervidobacterium nodosum Rt17-B1 
KingdomBacteria 
Replicon accessionNC_009718 
Strand- 
Start bp1308644 
End bp1309303 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content36% 
IMG OID640874992 
Productrhomboid family protein 
Protein accessionYP_001410720 
Protein GI154249895 
COG category[R] General function prediction only 
COG ID[COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTCCGC TGTACGATAC TATCCCTAGT ATACGTAAGC CTTTTGTGAA CATAATGATA 
ATAATTGTGA ACGTAATCGT TTTTGCTTAT GAACTCATGA TTTCGAGTAT GGATTGGTCT 
GGGGAAGTAT TAGAAGGATT TTTTCGCACA TTTGGTTTTG TCCCAGAAAA GATGTTTTAC 
GCTTTTCCAA TTGTTGCGAT GTTTACACAC ATGTTTGTTC ATGGTGGTTG GTCTCACATA 
ATTGGTAATA TGTGGTTTTT GAAGATATTT GGTGACAATG TTGAAGACGC AATGGGTCAT 
TTCAAGTTTT TTATTTTTTA CATCACCGGT GGGCTTTTTG CTCTCTTCTT CCATGTAATT 
TTTAACCCAT TCTCACCATA TCCACTTGTT GGTGCATCTG GTGCAATCTC AGCTGTAATG 
GGGGCTTATT TTGTATTATT TTATTATTCA AGAATAGTTT CTCTTGTCTT TTTGATTTTG 
CCGTTTATCG TTGAAATTCC AGCTTTTATT TACCTTCCAT ATTGGTTTAT AATACAAGTG 
TTGAATGGTT TGCTAGCTGA CGTGACAGGT ACAGGGGTTG CTTATTGGGC ACATGCAGGA 
GGTTTTATAT ACGGTGTGAT AGTAGGTATG AGAGTTAGAA AGAAAAGATA TTGGTACTAA
 
Protein sequence
MFPLYDTIPS IRKPFVNIMI IIVNVIVFAY ELMISSMDWS GEVLEGFFRT FGFVPEKMFY 
AFPIVAMFTH MFVHGGWSHI IGNMWFLKIF GDNVEDAMGH FKFFIFYITG GLFALFFHVI 
FNPFSPYPLV GASGAISAVM GAYFVLFYYS RIVSLVFLIL PFIVEIPAFI YLPYWFIIQV 
LNGLLADVTG TGVAYWAHAG GFIYGVIVGM RVRKKRYWY