Gene Fnod_1176 details

Gene Information

• Locus tag: Fnod_1176
• ID: 5452313
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Fervidobacterium nodosum Rt17-B1
• Kingdom: Bacteria
• Replicon accession: NC_009718
• Strand: +
• Start bp: 1264950
• End bp: 1266893
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 640874947
• Product: alpha amylase catalytic region
• Protein accession: YP_001410680
• Protein GI: 154249855
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0366] Glycosidases

Plasmid Coverage information

• Num covering plasmid clones: 36
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAA ACACCGCGAA TTTTAGCTTC ATTTTTATAG TGTTAATGTT AATTTTCTCA 
CTTTCATCTT GCTTTTACAC AATTAGGGAA GAAGAAAGTT TCGTAAAAAA CATCAAAGCA 
TCCTACAATA CTGACACAAA CGAATTGCGT ATTAATTGGG ACGTTGGAAC TTTAAATACC 
AACACTGATA TTAAATATTA TGTGCTCAAG AAACTGAAAA ATGAAAATCA ATATCGTAAA 
ATAGGGGAAG CCAACGGAAA ATTCTTTGGA TTGAATAACT TTTCAGGAAA AGACTTCTGG 
AACATTGAAA AAATCGGAAT AAAAGCTATT GTAAATGGAA AAGAAAGCGA AATCATCGAA 
ATTTCAAAGG AAAGTATAGA TCTTATATCT TTGGACGTTC CACTCACTTC TTCAACGATG 
TACACATTGT TTATCCGCTC TTTCTATGAT ACAAATGGAG ATGGAGTGGG AGATTTTAAT 
GGGGTCTTAC AGAAAGTTAA TTATCTAAAA TCTCTTGGAA TTGATACTGT TTGGTTTTTG 
CCATTTAATA AAAGCAAATC CTACCACGGA TACGATGTGG AAGATTATTA CGATGCGGAA 
CCAGATTATG GAACATTGGA AGATTTAGAC AACATGATAA AAGTTTTAAA TGAAAACGGA 
ATAAAAGTTG TAATGGATTT AGTTATTAAC CACACATCTG ATACTCATCC TTGGTTCTTA 
GATGCGATTG AAAAAACAAA AAACTCTCCA TATTGGAATT ACTACATAAT GAGTCTGCAA 
CAACCATCAA ATACTAATCA CTGGCATTAC AAAATAAATT CAAAAGGGCA GAAAGTATGG 
TACTTCGGAT TATTTGATTC ATCGATGCCT GATTTGAATT ACGCTAATCC AGAAGTTTTG 
AACGAAGTCA AAAAAATAAT AGATTTCTGG ATAACAATGG GAGTGGATGG TTTCAGATTG 
GACGCAGCAA AGCACTACTA TGGATGGGAT TGGAATGATG GAATAGACTC TTCAACAAGT 
GTTGCGAAGG CAATAGAAAA TTACGTTAGA ACTAAACTTG GAAATGACGC TATCGTTGTG 
AGTGAAGTTT ACGATGGTTC TCCTGATGTA CTTACTAAAT TCACACCCAT GCCTGTTTTT 
AATTTTACGT TTATGTACAA TATAAGACAA AACTACGAAG AAAGAGATTA TTTACTTCAC 
GATTCAATTA ATTGGATAAA TCCTTCATCG TACTACTTAA ACACCTATCA TTTCCCTTTT 
ATCGACAGCC ATGATTTAAA CAGATCTATA TCTGAGCTTG TTGATTCCAA ATATTCTGGA 
GATGTTCAAT CGGCTACAAA GCAGTATTTA CTTTTGAATG CGTTACTACT TTCACTAAAT 
GGTATGCCAA CGATATACTA CGGTGACGAA ATAGGCCTAC GTGGTTGGAA ATGGAACTCA 
TATCCATGGG ACTTACCCGT TCGCGAACCG ATGCAATGGT ATGCAACACA AAATGGCAGT 
GGTCAAACAT ATTGGACAAA GAGCTTTTAC ACAGGTATTA TAAATGGCAA CGCCAAAAAC 
GATGGAGCAA TTTACGACGA TCCAAACGAT GGCATATCCG TTGAAGAACA AGAAAGTGGA 
TATACAATTT TGAATTTCTT TAGAGAATTC ATAAATTTAA GAAAAACATA TCCAGCATTA 
GCATTTGGAA ATGCAACAAT TGAAAGAGAT TGGAAAAACC TGTACGTTTT GAAAAAGTCT 
TATGGTTCAC AGGAAGTGTT TGTGTTAATA AACCTTGACC CAACATATTC AAATAATTAT 
GAAATACCAG CAGGATACAC GTGGATTTGG TATGCTTTCT TTAACGAAAG CTCTTTTGAA 
TTTAGTCCAA AAAACATTCA GATTTTTCAA AACACACAAT GGATCATAAA CTCAAGGCAA 
GTTTATGTTT TCGTTAAGCA GTAA 

 

Protein sequence

MKKNTANFSF IFIVLMLIFS LSSCFYTIRE EESFVKNIKA SYNTDTNELR INWDVGTLNT 
NTDIKYYVLK KLKNENQYRK IGEANGKFFG LNNFSGKDFW NIEKIGIKAI VNGKESEIIE 
ISKESIDLIS LDVPLTSSTM YTLFIRSFYD TNGDGVGDFN GVLQKVNYLK SLGIDTVWFL 
PFNKSKSYHG YDVEDYYDAE PDYGTLEDLD NMIKVLNENG IKVVMDLVIN HTSDTHPWFL 
DAIEKTKNSP YWNYYIMSLQ QPSNTNHWHY KINSKGQKVW YFGLFDSSMP DLNYANPEVL 
NEVKKIIDFW ITMGVDGFRL DAAKHYYGWD WNDGIDSSTS VAKAIENYVR TKLGNDAIVV 
SEVYDGSPDV LTKFTPMPVF NFTFMYNIRQ NYEERDYLLH DSINWINPSS YYLNTYHFPF 
IDSHDLNRSI SELVDSKYSG DVQSATKQYL LLNALLLSLN GMPTIYYGDE IGLRGWKWNS 
YPWDLPVREP MQWYATQNGS GQTYWTKSFY TGIINGNAKN DGAIYDDPND GISVEEQESG 
YTILNFFREF INLRKTYPAL AFGNATIERD WKNLYVLKKS YGSQEVFVLI NLDPTYSNNY 
EIPAGYTWIW YAFFNESSFE FSPKNIQIFQ NTQWIINSRQ VYVFVKQ