Gene Fnod_1171 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFnod_1171 
Symbol 
ID5452542 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFervidobacterium nodosum Rt17-B1 
KingdomBacteria 
Replicon accessionNC_009718 
Strand+ 
Start bp1259765 
End bp1260769 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content40% 
IMG OID640874942 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_001410675 
Protein GI154249850 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGCGATAT TAAAAGTTGA AAATCTCAAA ATGCATTATA AAACAAAGAA AGGTTACGTT 
AAAGCCGTTG ATGGTATCTC ATTTGAATTG GAATCGGGCG AAAGCCTTGG TATAGTGGGT 
GAATCCGGTT GTGGTAAAAC TTCTGTTTCA ATGACCTTAT TAAGAATACT ACCTGAGAAC 
GCTCAATTCA TGGGCGGACA TGTTTGGTTC AACGATAATG GAAAAATGGT TGACTTAGTT 
TCTCTCCAAG AAGACGAAAT GAGACACTAC AGATGGAAAG GCATATCGAT GGTCTTCCAA 
GCAGCTATGA ACTCACTAAA TCCCGTTTAC AAAGTCGGTG ACCAAATTGT TGAAGCTATA 
TTGAACCACT ATCCTGATAC ACCCATTGAT GAAGCAAAAG CAAAAGTCGC AAAACTTTTC 
GAGTTAGTTA CACTCGACCC TAAACGCATG GAACAATACC CACACCAATA CAGCGGTGGT 
ATGAAACAAA GGGCTGTTAT AGCCTTGTCC CTTGCTTGTG ACCCAAAAGT AATCATTGCA 
GATGAACCTA CAACAGCTCT TGATGTTATT GTACAAGATA AAATACTAAG AGAAATGAAG 
AAAATACAAA AAGAGCTAAA CATGGCAATG ATATACATCT CTCACGACAT CGCAGTTATA 
GCAGAAGTCA GTGATAAAAT CGCGGTAATG TACGCTGGCA AATTTGTCGA GCAAGCTGAC 
TCTACGACTA TATTCAAAAG ACCAATGCAT CCTTATACAT TTTTACTCAT GAACGCATTC 
CCAAGCCACG TTGGTGAAAA AAGAAAACTA TTCACTATTC CAGGTGAACC ACCTGACTTA 
TTGAATCCGC CAACTGGTTG TAGATTCGCC CCGAGATGTC CTTGGGCAAC GGATAAATGT 
AGGACAACCG AACCTGAATA CGTAGAAGTT GAGAAGGGCC ATTTCCTTGC TTGCTGGCAT 
CCACTTACAG AAGAGGTGAG ACAGAATGAG TTCAAAAAAC AATAG
 
Protein sequence
MAILKVENLK MHYKTKKGYV KAVDGISFEL ESGESLGIVG ESGCGKTSVS MTLLRILPEN 
AQFMGGHVWF NDNGKMVDLV SLQEDEMRHY RWKGISMVFQ AAMNSLNPVY KVGDQIVEAI 
LNHYPDTPID EAKAKVAKLF ELVTLDPKRM EQYPHQYSGG MKQRAVIALS LACDPKVIIA 
DEPTTALDVI VQDKILREMK KIQKELNMAM IYISHDIAVI AEVSDKIAVM YAGKFVEQAD 
STTIFKRPMH PYTFLLMNAF PSHVGEKRKL FTIPGEPPDL LNPPTGCRFA PRCPWATDKC 
RTTEPEYVEV EKGHFLACWH PLTEEVRQNE FKKQ