Gene Fnod_1121 details

Gene Information

• Locus tag: Fnod_1121
• Symbol: rpsE
• ID: 5452197
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Fervidobacterium nodosum Rt17-B1
• Kingdom: Bacteria
• Replicon accession: NC_009718
• Strand: -
• Start bp: 1215578
• End bp: 1216108
• Gene Length: 531 bp
• Protein Length: 176 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 640874889
• Product: 30S ribosomal protein S5
• Protein accession: YP_001410625
• Protein GI: 154249800
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 0.421143
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTCAGAAA TTGCCGAAAA GATAAAACAA GCAGGTGAAA CATTTGAAGA AAGGATTATT 
GAAATTAGAA GAACGACTAA AGTTACAAAA GGTGGTAAAA ATCTTTCTTT CAGAGTTCTT 
GCAGTTGTCG GAAATAGAAA TGGTAAAGTC GGTGTCGGTG TTGGAAAAGC AAGAGAAGTT 
CCTGATGCAA TTAGAAAAGC GCTTGTTAGT GCAAGAAGGA ATATAATAGA AATTCCTGTA 
GTTAAGGGTA CAATCCCTCA CGAAGTAGTT GGCAGACAAG ACGCAGCTAA GATACTTATG 
AAGCCTGCTG CACCAGGTAC CGGTATAATT GCCAACGGTA CAGTACGTGC TATCCTTGAG 
CTTGCGGGCG TTCAAAACGT TCTTACAAAA GCAATGGGGT CAACAAATCC AGTAATAATG 
GCTCAAGCAA CAGTAAATGG CGTAAAGAAC CTTTACAGTA TAGACAAAAT AGCAGCTCTT 
AGAGATATTA CCCCAGCTCA AGTAGTACGC GGTGTTAAAA AGGAGGGCTA A 

 

Protein sequence

MSEIAEKIKQ AGETFEERII EIRRTTKVTK GGKNLSFRVL AVVGNRNGKV GVGVGKAREV 
PDAIRKALVS ARRNIIEIPV VKGTIPHEVV GRQDAAKILM KPAAPGTGII ANGTVRAILE 
LAGVQNVLTK AMGSTNPVIM AQATVNGVKN LYSIDKIAAL RDITPAQVVR GVKKEG