Gene Fnod_1110 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFnod_1110 
Symbol 
ID5451717 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFervidobacterium nodosum Rt17-B1 
KingdomBacteria 
Replicon accessionNC_009718 
Strand- 
Start bp1209118 
End bp1210104 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content37% 
IMG OID640874878 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_001410614 
Protein GI154249789 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones3 
Plasmid unclonability p-value0.00000205308 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTCAAA TTACAGGAAG GAAATTCAAA TTAGAAGAGC AGGTAGAACA CGAGGACCAT 
TATTATGCAA GGTATTCCCT CTCACCGCTT GAAAAAGGTT ACGCCGTAAC AGTTGGGAAT 
ACACTTAGAA GAGTTCTCCT CTCTTCTATT CCAAGTTTTG CAATAACTGA TGTAAGATTC 
GTAAAACCAG AAAAATACCA TGAGTTTGAT ACAATCGAAG GCGCAAAAGA AGACATAATG 
GATATACTCT TGAATCTTAA GAAAGTGCAA TTACGCGTTG ATACCTACGT TGAATCGCCT 
GTGAAATTAA CGATAAATAA AAAAGGACCT GGAGTACTTA CGGCAGGGGA TATTGAATGC 
CCAGCGGGAG TAGTTGTGGT CAATCCAGGT CATTACCTTG CAACGCTGAA CGAAGACGCT 
GATTTAGAAA TAGAACTCTA TGCAACATTT GGAAAAGGCT TTGTCCCGGC AGCAGATAGA 
AATGAAAGAC CAGAAATAGG TTGGATTGTT TTAGATGGAG TCTACAGCCC AGTTATAAAA 
GTCAATTGGC TTGTTGAAAA TGTTCGTGTT GATAAAAGAA CGGACTATGA AAAACTCATT 
CTTGAAATTT GGACAAAGAA GAGCATAAAA CCATCTGAAG CTTTGAAGCA TTCACTAAAA 
ATAATTCTTG ACCACTTTAT GTTTATCGAA CAAAGTCTTA GTGATGTTGA GGAATTACCA 
ATACCAATAA TACAAGAAAC TGCAGTAGTA ACAGAAGAAA TAGGTTCGCC AGAAGATGTA 
ATGAGCAAAA AAGTTGAAGA ACTAGAACTA TCTGCAAGAT CACTTAATTG TTTGAAGAGA 
GACAAGATAG AGACAATAGG TGATCTGTTA TCAAGAACAG AAGAAGAGTT GATGAAAATA 
AAGAATTTTG GCCTCAAATC TCTCGAGGAA GTAAGAGAAA AACTCCGTGA CAAATTTGGT 
CTGTCACTAA GAAAGGGGGA CAAATGA
 
Protein sequence
MIQITGRKFK LEEQVEHEDH YYARYSLSPL EKGYAVTVGN TLRRVLLSSI PSFAITDVRF 
VKPEKYHEFD TIEGAKEDIM DILLNLKKVQ LRVDTYVESP VKLTINKKGP GVLTAGDIEC 
PAGVVVVNPG HYLATLNEDA DLEIELYATF GKGFVPAADR NERPEIGWIV LDGVYSPVIK 
VNWLVENVRV DKRTDYEKLI LEIWTKKSIK PSEALKHSLK IILDHFMFIE QSLSDVEELP 
IPIIQETAVV TEEIGSPEDV MSKKVEELEL SARSLNCLKR DKIETIGDLL SRTEEELMKI 
KNFGLKSLEE VREKLRDKFG LSLRKGDK