| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_1076 |
|---|
| Symbol | |
|---|
| ID | 5452855 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | + |
|---|
| Start bp | 1175872 |
|---|
| End bp | 1176915 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640874844 |
|---|
| Product | peptidase M42 family protein |
|---|
| Protein accession | YP_001410581 |
|---|
| Protein GI | 154249756 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1363] Cellulase M and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.189287 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGTAAAG AGAAAAAAGA AAAATTAACT ACAAAAGACT TACTTTTAAA ATTTTCAGCT
ATTCCAGGAC CTTCTGGATA CGAAGATGAA GTCCTTGAAG AAATAAAAAC AATTATGAGT
GATTATTCCG ACGAGTGTTT CCGAACACCT ATGGGCAGCC TTGTGTGTGT TAAAAAAGGC
GCGGGACCGA AGATTGGTTT TTTTGCTCAT GCTGACCAGA TAGCGTTTGT CGTTACGAAA
ATATACGAAG ATGGATTTTT GAGACTTTCA GGCGTTGGTG GATGGGATCC AAAAACAGTT
GTAAGCCAAA AAGTATGGAT TCACACAAAG AAAGGAAAAT TAAGAGGTAT AGTTGGCTTT
ATGCCTCCGC ACCTCCAAAC AACGGAAGAG TCGAAAAAAG TACCAGATTA TGACCATTTA
TTCGTCGACG TTACTATGAA CCCAAATTGG AAGGATATAT CGATAGGTGA TCTGGTAACT
TTAGATATAG AAGGATTTGA GAAAAACGGG ACGATATTCG CGCCAGCACT TGATAACAGA
GCAAGTTGTG TGGCCATAAT CAAGGCGGCT GAGTTACTCT CAAAAATTAA TACACAAGCC
CAGGTTTATT ATATATTCTC AACCCAAGAA GAGATAGGGG GACCAGGTGC GAAAAGCGGT
GCGTACATTT CAGAGATAGA ATACGGCATA GTCATAGATG TTACACATGG TGATGAGGAT
ATACCTGGTT ATCCTAAGAT AAAGATGGGC GAAGGACCAG CCGTTGCTGT TGGACCTGTT
ACAAATAAAA AATTTGTGGA GCATATAAAC AAAGTAGCTG GAAAATACAA CATAAAGCTC
CAAATAGAAC CCATACCGGG AAGGTCTGGA ACAGACACCG ACGAAGTCCA ACTTACGAGA
ATAGGTGTTA AAACAGCTTT GATATCTATA CCTCTAAAAT ACATGCACAA CCCATACGAA
AAAATTACAG TTAAAGACGT CGAAGACACA GCCAAATTAC TTGCATTCAC GGCAGCTGAA
ATCACGGAGG TGGAAAAGCA ATGA
|
|---|
| Protein sequence | MSKEKKEKLT TKDLLLKFSA IPGPSGYEDE VLEEIKTIMS DYSDECFRTP MGSLVCVKKG
AGPKIGFFAH ADQIAFVVTK IYEDGFLRLS GVGGWDPKTV VSQKVWIHTK KGKLRGIVGF
MPPHLQTTEE SKKVPDYDHL FVDVTMNPNW KDISIGDLVT LDIEGFEKNG TIFAPALDNR
ASCVAIIKAA ELLSKINTQA QVYYIFSTQE EIGGPGAKSG AYISEIEYGI VIDVTHGDED
IPGYPKIKMG EGPAVAVGPV TNKKFVEHIN KVAGKYNIKL QIEPIPGRSG TDTDEVQLTR
IGVKTALISI PLKYMHNPYE KITVKDVEDT AKLLAFTAAE ITEVEKQ
|
|---|
| |