| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_1009 |
|---|
| Symbol | |
|---|
| ID | 5451576 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | + |
|---|
| Start bp | 1105321 |
|---|
| End bp | 1106037 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 640874771 |
|---|
| Product | peptidase A24A domain-containing protein |
|---|
| Protein accession | YP_001410516 |
|---|
| Protein GI | 154249691 |
|---|
| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1989] Type II secretory pathway, prepilin signal peptidase PulO and related peptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00230804 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTGGTATA AAATGAAGTA TGTTATCTCA TTCATACTAG GTGCTATATT TGGTAGTTTT
GCTAATGTTT TAATATATAG ACCTATTGCG GGGCTCAAAT TAAATGAGCC TCGCTTTTCA
GTCTGTCCAA ATTGCAAAAA TAGAATAAGA TGGTATGATA ACATACCTAT ATTAAGTTAT
ATTATTCTTG GCGGGAAATG TAGATATTGT AAAAGTAAGA TAAGCATAAG GTATCCAATT
ATAGAGATTT TATACGCCAT AGTGTTTACA CTAAATGCTA TATTTTTCCC TCTTGATATC
TCCATAGTGC TAAACATTAT TTTCACTGTT TCCGTTCCGG CCGTATTCAT TGATTTTAAA
AAAATGCTCT TGCCAGATTA CACATGGATA GTGATTTTAA TATCATCTTT CTACTCAAAT
GTTGCTCATT TTAAAGAAAA TATTTTGCTA GACACTTTCG GTGCTCTAAT TACTTTAGTA
ATTCTTTTGC TTCTTAAAAT AAGATACAAA GACGGCATAG GTGAAGGTGA CATATTTCTC
TTTCCAGTAG TTGCTTTTTC AACAGGATTT ATTTTCATGC CTCTGCTCCT TCTAATTTCT
TCTGTTTCAG GTATAATTTT TTCTTTTCTA AAGAAAAACA AACTCATTCC TTTCGGTCCA
TTTATACTTA TAAGTGGTTA TATTTTAACA ATATTTAGAT ATTCAATATT CTTATAG
|
|---|
| Protein sequence | MWYKMKYVIS FILGAIFGSF ANVLIYRPIA GLKLNEPRFS VCPNCKNRIR WYDNIPILSY
IILGGKCRYC KSKISIRYPI IEILYAIVFT LNAIFFPLDI SIVLNIIFTV SVPAVFIDFK
KMLLPDYTWI VILISSFYSN VAHFKENILL DTFGALITLV ILLLLKIRYK DGIGEGDIFL
FPVVAFSTGF IFMPLLLLIS SVSGIIFSFL KKNKLIPFGP FILISGYILT IFRYSIFL
|
|---|
| |