| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_1000 |
|---|
| Symbol | |
|---|
| ID | 5452114 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | - |
|---|
| Start bp | 1094691 |
|---|
| End bp | 1096199 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 640874762 |
|---|
| Product | SMC domain-containing protein |
|---|
| Protein accession | YP_001410507 |
|---|
| Protein GI | 154249682 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0497] ATPase involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00634] DNA repair protein RecN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATTGAAC TACTGCATAT AAACGAATAT GTTTATCTTA AAGATATTGA TATTTATTTT
TCCGAAGGTT TAAATGTTAT CACAGGCGAA ACAGGCACTG GGAAAAGTTT GCTATTAGAT
ATAATTGGTG CGTTTGTTGA TTATGGAAAC GTGAGAAGTG ATGTTTTCTC TGCTGACATC
GTTTTAAATA TTGATCATCC TAACGAAGAA TATGGAATAA GCAGTGGGCA ACATATATTC
AGTGTTGAGA AAAAGGGGAA AAAGGTTTTT TACAAGATAG ATGGTAAACT TGTGCCAAAA
GATATTGTTC AAAACATCGT ATCGAATATA ATTACTATAC ATAAGCAAAA TTCTCATATG
AAATTACTTG AAAAATCGTT TATATTAGAG ATACTCGATA ATATTGCACA GCACGAAGAA
AAAATAATAG AATATAAAGA ACTTTACCAA CGTTATAATA ATATAATAAA GATGCTTTCT
GTTGTTGATA AGGACAAGTT AATTCAAGAA ATTGAGGAAC TAAGGCAAAA AATTAGTGAG
GTAGATTCAG CAAATTTAAG TGTCGAAGAA GAGGAAGAAC TTGAGAATGC TTACAAAAAA
GCTTCAAACA TACAGACGCT TTTACAAAAT TATAACTTAG CATCTCAGCA ACTTGAGGAA
ACGGAAAGTG TATTACGGAA ACTTTACTCT TTCCTAGAGG AAAAATTCCA CAATGAATTG
GATAAGATAA TTGAATCAGT AGCAGAACTT GAGAACAGTT TGTCAAAAGA ATTGATAAAA
CTTGATGAGG TTAATATAGA GGATATAGAG AACAGGTTAT GGGTTTACAA AAAGATTAGA
AGAAAATACG GTCCAACAAC CGAAGACGTA CTTGAAAATC TTAGCATATG GAAAAAAACT
TTGGAAGAGA AAGAAAAGAC CTTGTCGCTG ATTGAAAATG CCGATTACGA AAAATCTACT
CTTGAAGATA AATTGTACAA AATTGCTGAA GAAATAAGTC TTAATCGTAA AAAATCATCT
GAGAAGATTA TAAGTGAAAT TCAGGAGCAT CTTAAAGATT TGAATATGAA TGCGAGGATA
GATTTCTCAT TTTCAAAAAC AGAACTTTCT TCAAATGGTA TAGATGAAGT AGAGTTGGTT
GGTAGTACTT TAAGTGCAGG CCCACTTTAC CCGCTAAGAA AAATAGTTTC TGGTGGTGAA
CTCTCAAGAT TGATGCTTGC ACTTGAACTA TCTACTGTAA GTACACCTGT TTTGATTTAT
GACGAAATAG ATTCTGGAGT TGGTGGAAAA ACAGCGGTCA AACTTTCCGA AAAACTTGAA
AGATTGGCAA AAGAACATCA AATTATCATC GTAACGCATT TGCCACAGAT AGCTTTGAGG
GCTGAAAAAC ATTTTTCTAT TGTAAGAAAC GGTGATAGTG TAATAATAAA AGAACTTAAC
GATAATGAAA GAAATGAAGA GATAAAGAGG ATGTTCGGTG GGGAAGAAAT CGTAGAAAAA
ATTAAATAA
|
|---|
| Protein sequence | MIELLHINEY VYLKDIDIYF SEGLNVITGE TGTGKSLLLD IIGAFVDYGN VRSDVFSADI
VLNIDHPNEE YGISSGQHIF SVEKKGKKVF YKIDGKLVPK DIVQNIVSNI ITIHKQNSHM
KLLEKSFILE ILDNIAQHEE KIIEYKELYQ RYNNIIKMLS VVDKDKLIQE IEELRQKISE
VDSANLSVEE EEELENAYKK ASNIQTLLQN YNLASQQLEE TESVLRKLYS FLEEKFHNEL
DKIIESVAEL ENSLSKELIK LDEVNIEDIE NRLWVYKKIR RKYGPTTEDV LENLSIWKKT
LEEKEKTLSL IENADYEKST LEDKLYKIAE EISLNRKKSS EKIISEIQEH LKDLNMNARI
DFSFSKTELS SNGIDEVELV GSTLSAGPLY PLRKIVSGGE LSRLMLALEL STVSTPVLIY
DEIDSGVGGK TAVKLSEKLE RLAKEHQIII VTHLPQIALR AEKHFSIVRN GDSVIIKELN
DNERNEEIKR MFGGEEIVEK IK
|
|---|
| |