Gene Fnod_0952 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFnod_0952 
SymbolispG 
ID5451633 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFervidobacterium nodosum Rt17-B1 
KingdomBacteria 
Replicon accessionNC_009718 
Strand+ 
Start bp1041035 
End bp1042123 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content38% 
IMG OID640874712 
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
Protein accessionYP_001410459 
Protein GI154249634 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0248214 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATACGG TTATTAAAAG ACGTGAAACA AGGGTAGTTA AAGTAGGTAA CGCGTTCATC 
GGTGGTGGTC ATCCGATTTC TATTCAATCA ATGACTAACA CTAATACAGA GAACGTAGAA 
TCGACTATTA ATCAAATAAA TGAGCTTGAA AAAGCGGGTT GTGAGATTGT AAGGATTTCA 
CTTCCAACTT TGGAAAGCGC AAGGAAAGTT AAAGAAATAA AACAGAGAGT AAGTATTCCA 
GTGGTTGGTG ATATTCATTT CGATTACAAA ATCGCTATTG AAGCTATTAA GAATGGGATT 
GATAAGATAA GGATTAATCC GGGAAATATA GGTGATGAGT CAAAAGTTGA AGAGATTGTC 
AGAGCTGCAA AGGAATACAA AGTCCCGATA AGAGTAGGGG CAAATAGTGG CTCGTTGCCA 
AAAGATTTAG AAAATCTTCC AAAGGCTCAA GCGTTAGGTG AGGCGGCATT AAGAGAAGTT 
AAGATTTTAG AGAAATACGG TTTTGAAGAT ATAGTGATAT CCGTAAAAAG CTCCGATGTA 
TTGGAAACGA TTGAGGCGAA TAGATACATC GCAAAACTTG TTGATTATCC GCTCCACGTT 
GGCGTTACGG AAGCGGGAAC ATTGTACAAT TCGCTGATAA AATCTTCAAT AGCTTTGGGT 
GTATTGATTT TAGAAGGGCT TGTTGATACT GTTAGAATAT CTATAGCTGG AGCGCCTGTA 
AACGAGGTTA TAGCGGCTAA AAAGTTGTTA ACGTTCCTGC ATTTACGGAA AGGACCAAAT 
ATCGTAGCTT GTCCAACATG CTCGAGAACT GTATTTGACG TTGAAAATGT CGCTTTGGAA 
GTTGAAAAAA TGCTTTCGGA TATTGATGAA GAGATAACTG TATCTGTGCT TGGCTGTGTT 
GTTAATGGAA TAGGTGAGGG TAAAGAGGCA GATGTAGGTA TAGCTGGTAC AAAATCAGGA 
GTAGTGGTCT TCCACAAAGG TGAGATTGTT GGAACTTTTA CGTATGAAAT GGGAATGGAG 
AAATTGAAAG AGTACGTAGA AAAAGTTATA GAAGAGAAAG CGAGTAATAG AAATTTTAGA 
AATTGGTGA
 
Protein sequence
MDTVIKRRET RVVKVGNAFI GGGHPISIQS MTNTNTENVE STINQINELE KAGCEIVRIS 
LPTLESARKV KEIKQRVSIP VVGDIHFDYK IAIEAIKNGI DKIRINPGNI GDESKVEEIV 
RAAKEYKVPI RVGANSGSLP KDLENLPKAQ ALGEAALREV KILEKYGFED IVISVKSSDV 
LETIEANRYI AKLVDYPLHV GVTEAGTLYN SLIKSSIALG VLILEGLVDT VRISIAGAPV 
NEVIAAKKLL TFLHLRKGPN IVACPTCSRT VFDVENVALE VEKMLSDIDE EITVSVLGCV 
VNGIGEGKEA DVGIAGTKSG VVVFHKGEIV GTFTYEMGME KLKEYVEKVI EEKASNRNFR 
NW